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6465c86
rm badges
acocac Mar 12, 2025
531ce58
rm notebook authors in contributions
acocac Mar 12, 2025
d1a3198
mv codebase developers to additional information
acocac Mar 12, 2025
5c16e4b
rm modelling publications
acocac Mar 12, 2025
4b093b2
add citations
acocac Mar 12, 2025
6ebe1cc
update url to edsbook license
acocac Mar 12, 2025
db7ee86
rm cell outputs
acocac Mar 12, 2025
bb5fd13
set narrative citation of the dataset in the fetch section
acocac Mar 12, 2025
44e9881
change gh org
acocac Mar 12, 2025
47676b9
set deploy
acocac Mar 12, 2025
b9d313e
set execute
acocac Mar 12, 2025
c919484
set myst.yml
acocac Mar 12, 2025
218d733
change gh org
acocac Mar 12, 2025
2368efd
set references
acocac Mar 12, 2025
ab2cad1
change gh org
acocac Mar 12, 2025
81262e9
Bump version: v1.0.2 → v2.0.0
acocac Mar 12, 2025
ef52d56
generate CITATION.cff from myst
acocac Mar 12, 2025
71cb7ab
set _gallery_info.yml
acocac Mar 12, 2025
f02153b
rm render workflow
acocac Mar 12, 2025
3ae8d9b
fix leading space in citations
acocac Mar 12, 2025
841239c
fix leading space in citations in additional information
acocac Mar 12, 2025
817ccba
hide cell-input for version and test date
acocac Mar 12, 2025
e1b7aae
add review url in additional information
acocac Mar 13, 2025
f99b515
remove-input for version and test date cell
acocac Mar 13, 2025
8f74058
update bumpversion target
acocac Mar 13, 2025
b4884bf
Merge remote-tracking branch 'origin/main'
acocac Mar 13, 2025
43ff612
update url to edsbook license
acocac Mar 15, 2025
441190e
rm quotes
acocac Mar 15, 2025
9124ad8
update keywords
acocac Mar 27, 2025
0659127
rm gallery file
acocac Mar 27, 2025
46daeef
update subject and keywords
acocac Apr 21, 2025
69a218a
set netlify.toml
acocac May 2, 2025
5bbedc4
change base
acocac May 2, 2025
97bc689
change base
acocac May 2, 2025
28caf1b
fix file to ignore
acocac May 2, 2025
7ea758e
rm old config json
acocac May 2, 2025
3db3d60
set index placeholder
acocac May 15, 2025
76004bc
hide toc
acocac May 15, 2025
b924e8f
rm autogenerate line in myst.yml
acocac May 15, 2025
8bf4bea
rm topic in reference
acocac May 15, 2025
58f5bf8
chnage publish
acocac May 16, 2025
ccc0345
temp string
acocac May 16, 2025
1ba51ec
Revert "temp string"
acocac May 16, 2025
33aaff8
add albumentations>=1.0.0
acocac May 16, 2025
0d2ab95
ping albumentations==2.0.6
acocac May 16, 2025
9202596
rever publish path
acocac May 16, 2025
dcd99c1
add nb in folder
acocac May 16, 2025
fd7b590
test
acocac May 16, 2025
8fc99d8
Revert "test"
acocac May 16, 2025
87f3d54
test
acocac May 16, 2025
06ff342
revert changes
acocac May 16, 2025
207ec64
set _static images
acocac May 16, 2025
f165a2d
rm static images
acocac May 16, 2025
2ab474c
rm netlify condition
acocac May 16, 2025
6312340
set redirect
acocac May 18, 2025
df39bd2
rm redirect
acocac May 18, 2025
1385b81
set nightly-builds
acocac May 18, 2025
c187552
rm params
acocac May 18, 2025
7109b1f
rm workflow run
acocac May 18, 2025
dd219a4
Revert "rm workflow run"
acocac May 18, 2025
37e00d8
fix title
acocac May 18, 2025
0a3d64d
fix action name
acocac May 18, 2025
387d916
simplify readme
acocac May 18, 2025
b3e18a4
rm div
acocac May 18, 2025
2faf44f
add readme to index
acocac May 18, 2025
b92a14c
rm export pdf
acocac May 18, 2025
b018f8e
set YYYY.MM.patch version
acocac May 18, 2025
5c3eb07
rm index file
acocac May 18, 2025
d7c4572
change url to github
acocac May 18, 2025
2db83a8
add details editor
acocac May 18, 2025
af3c305
add open review
acocac May 18, 2025
6a64f99
add open review
acocac May 18, 2025
7815a78
rm execute
acocac May 18, 2025
33b818d
rename build action
acocac May 18, 2025
94d30f9
change triggering action
acocac May 18, 2025
fa18939
rename triggering action
acocac May 18, 2025
df644fd
rename action to monthly build
acocac May 18, 2025
a1cd0e9
rename job
acocac May 18, 2025
0fac756
rename job
acocac May 18, 2025
1262df0
temporal 3h cron
acocac May 19, 2025
b94417c
temporal 3h cron fixed
acocac May 19, 2025
fecae16
add monthly-build
acocac May 19, 2025
b4a608e
standard name
acocac May 19, 2025
5d282b8
rm deploy
acocac May 19, 2025
b9ff7b6
fix workflows
acocac May 19, 2025
d4478ac
rm reference
acocac May 19, 2025
df4b4d2
fix zenodo doi badge
acocac May 19, 2025
a9f2882
fix versioning
acocac May 19, 2025
313ef1c
fix url readme
acocac May 19, 2025
c07c36c
rm hide_toc
acocac May 20, 2025
fca3aac
update conda lock
acocac Jun 8, 2025
e537c37
Merge pull request #10 from eds-book/main
acocac Jun 19, 2025
e60d627
Update myst.yml
acocac Jun 19, 2025
4860bc5
Bump version: v2025.05.0 → v2025.6.0
acocac Jun 20, 2025
8c287bc
update citation
acocac Jun 20, 2025
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3 changes: 2 additions & 1 deletion .binder/environment.yml
Original file line number Diff line number Diff line change
Expand Up @@ -15,4 +15,5 @@ dependencies:
- huggingface_hub
- pip
- pip:
- deepforest==1.4.0
- deepforest==1.4.0
- albumentations==2.0.6
8 changes: 4 additions & 4 deletions .bumpversion.cfg
Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
[bumpversion]
current_version = v1.0.2
current_version = v2025.6.0
commit = True
tag = True
parse = (v(?P<major>\d+))(.(?P<minor>\d+))(.(?P<patch>\d+))
serialize = v{major}.{minor}.{patch}
parse = (v(?P<year>\d+))(.(?P<month>\d+))(.(?P<patch>\d+))
serialize = v{year}.{month}.{patch}

[bumpversion:file:CITATION.cff]
[bumpversion:file:myst.yml]

[bumpversion:file:notebook.ipynb]
search = "print('Notebook repository version: {current_version}')\n"
Expand Down
5 changes: 0 additions & 5 deletions .github/config.json

This file was deleted.

27 changes: 3 additions & 24 deletions .github/workflows/binder.yaml
Original file line number Diff line number Diff line change
@@ -1,30 +1,9 @@
# Reference https://mybinder.readthedocs.io/en/latest/howto/gh-actions-badges.html
name: Test this PR on Binder Badge
name: test-binder

on:
pull_request_target:
types: [opened]

permissions:
pull-requests:
write

jobs:
binder:
runs-on: ubuntu-latest
steps:
- name: comment on PR with Binder link
uses: actions/github-script@v3
with:
github-token: ${{secrets.GITHUB_TOKEN}}
script: |
var PR_HEAD_USERREPO = process.env.PR_HEAD_USERREPO;
var PR_HEAD_REF = process.env.PR_HEAD_REF;
github.issues.createComment({
issue_number: context.issue.number,
owner: context.repo.owner,
repo: context.repo.repo,
body: `[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/${PR_HEAD_USERREPO}/${PR_HEAD_REF}) :point_left: Test this PR on Binder`
})
env:
PR_HEAD_REF: ${{ github.event.pull_request.head.ref }}
PR_HEAD_USERREPO: ${{ github.event.pull_request.head.repo.full_name }}
uses: eds-book/notebooks-workflows/.github/workflows/binder.yaml@main
48 changes: 0 additions & 48 deletions .github/workflows/build.yaml

This file was deleted.

12 changes: 12 additions & 0 deletions .github/workflows/monthly-build.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
name: monthly-build

on:
schedule:
- cron: "0 9 1 * *" # At 09:00 UTC on the 1st of each month

jobs:
build-and-execute:
uses: eds-book/notebooks-workflows/.github/workflows/build.yaml@main
secrets:
QUAY_USERNAME: ${{ secrets.QUAY_USERNAME }}
QUAY_PASSWORD: ${{ secrets.QUAY_PASSWORD }}
74 changes: 0 additions & 74 deletions .github/workflows/preview.yaml

This file was deleted.

18 changes: 18 additions & 0 deletions .github/workflows/publish.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
name: publish

on:
push:
branches: [main, postprint]
paths-ignore:
- 'README.md'

jobs:
build-and-execute:
uses: eds-book/notebooks-workflows/.github/workflows/build.yaml@main
secrets:
QUAY_USERNAME: ${{ secrets.QUAY_USERNAME }}
QUAY_PASSWORD: ${{ secrets.QUAY_PASSWORD }}

deploy:
needs: build-and-execute
uses: eds-book/notebooks-workflows/.github/workflows/deploy.yaml@main
71 changes: 0 additions & 71 deletions .github/workflows/render.yaml

This file was deleted.

40 changes: 2 additions & 38 deletions .github/workflows/test.yaml
Original file line number Diff line number Diff line change
@@ -1,44 +1,8 @@
name: Test container image build
name: test-container

on:
pull_request:

jobs:
test-build:
runs-on: ubuntu-latest
if: github.repository_owner == 'eds-book-gallery'
steps:

# For biggish images, github actions runs out of disk space.
# So we cleanup some unwanted things in the disk image, and reclaim that space for our docker use
# https://github.com/actions/virtual-environments/issues/2606#issuecomment-772683150
# and https://github.com/easimon/maximize-build-space/blob/b4d02c14493a9653fe7af06cc89ca5298071c66e/action.yml#L104
# This gives us a total of about 52G of free space, which should be enough for now
- name: cleanup disk space
run: |
sudo rm -rf /usr/local/lib/android /usr/share/dotnet /opt/ghc
df -h

- name: checkout files in repo
uses: actions/checkout@main

# Set quay image name
- name: Get properties from the config file
id: config_file
uses: notiz-dev/github-action-json-property@release
with:
path: '.github/config.json'
prop_path: 'quay_image'

- name: Build the image and push it if `NO_PUSH` disabled
uses: jupyterhub/repo2docker-action@master
with: # make sure username & password/token matches your registry
NO_PUSH: "true"
DOCKER_REGISTRY: "quay.io"

# Uncomment and modify the following line with your image name. a
IMAGE_NAME: ${{steps.config_quay.outputs.prop}}

# Lets us monitor disks getting full as images get bigger over time
- name: Show how much disk space is left
run: df -h
uses: eds-book/notebooks-workflows/.github/workflows/test.yaml@main
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