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11 changes: 4 additions & 7 deletions README.md
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# brainrender
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From: Claudi et al. (2021) Visualizing anatomically registered data with brainrender. eLife


## Documentation

brainrender is a project of the BrainGlobe Initiative, which is a collaborative effort to develop a suite of Python-based software tools for computational neuroanatomy. A comprehensive online documentation for brainrender can be found on the BrainGlobe website [here](https://brainglobe.info/documentation/brainrender/index.html).

Furthermore, an open-access journal article describing BrainRender has been published in eLife, available [here](https://doi.org/10.7554/eLife.65751).


## Installation

From PyPI:
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ipts = region.mesh.inside_points(pts).coordinates
return np.vstack(random.choices(ipts, k=N))


# Display the Allen Brain mouse atlas.
scene = Scene(atlas_name="allen_mouse_25um", title="Cells in primary visual cortex")

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