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Merged
PolarBean merged 21 commits into from
Aug 11, 2026
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Merged

Hoops docs only #538

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ded7850
Add blog post for tawny dragon brain atlas
kjungwoo5 Jul 13, 2026
16c3a86
Fixed image captions and descriptions
kjungwoo5 Jul 15, 2026
5e3ddea
Added images for tawny dragon blog
kjungwoo5 Jul 15, 2026
8b9a0f1
Added dragon brain atlas
kjungwoo5 Jul 15, 2026
e8588c9
Added dragon brain atlas to atlas-details
kjungwoo5 Jul 15, 2026
5b1680a
Added a comment about this being the first dragon brain added to brai…
kjungwoo5 Jul 21, 2026
8390965
Updated blog post
kjungwoo5 Jul 22, 2026
0047d89
Update publication date and edit introduction
PolarBean Jul 23, 2026
6c3b67e
More informative description in atlas-details.md
kjungwoo5 Aug 1, 2026
dfab532
Added hyperlink to publication in blog post
kjungwoo5 Aug 1, 2026
08900e3
BrainGlobe loses a dragon, gains a lizard. Also capitalisation of ima…
kjungwoo5 Aug 1, 2026
14a774a
Rename atlas name to hoops_tawny_dragon
kjungwoo5 Aug 2, 2026
b3437e1
Rename atlas name to hoops_tawny_dragon in atlas_table
kjungwoo5 Aug 2, 2026
9c9985a
Rename atlas name to hoops_tawny_dragon in atlas-details
kjungwoo5 Aug 2, 2026
b115789
Apply suggestion from @adamltyson
PolarBean Aug 11, 2026
729ad7a
merge main
PolarBean Aug 11, 2026
420ad47
fix ng link
PolarBean Aug 11, 2026
2c07b55
remove blogpost for now
PolarBean Aug 11, 2026
6b278d7
Delete docs/source/blog/images/hoops_dragon_annotations.png
PolarBean Aug 11, 2026
79fd756
Delete docs/source/blog/images/tawny_dragon_brain_napari.png
PolarBean Aug 11, 2026
a7020e8
Removed reference to the blog post for the tawny dragon lizard brain …
PolarBean Aug 11, 2026
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1 change: 1 addition & 0 deletions docs/source/documentation/brainglobe-atlasapi/_atlas_table.md
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Expand Up @@ -36,3 +36,4 @@
| [Allen CCFv2 Mouse Brain Atlas](https://doi.org/10.1038/nature13186) | 25 micron | P56 | Nissl | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#allen-ccfv2-mouse-brain-atlas) |
| [Allen CCFv2 Mouse Fiber Tracts Atlas](https://doi.org/10.1038/nature13186) | 25 micron | P56 | Nissl | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#allen-ccfv2-mouse-fiber-tracts-atlas) |
| [Allen CCFv2 Developmental Mouse Brain Atlas](https://doi.org/10.1038/nature13186) | 25 micron | P56 | Nissl | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#allen-ccfv2-developmental-mouse-brain-atlas) |
| [Hoops Tawny Dragon Brain Atlas](https://doi.org/10.1007/s00429-021-02282-z) | 50 micron | Adult | MRI | [![More info](https://img.shields.io/badge/More%20info-Click%20here-blue)](https://brainglobe.info/documentation/brainglobe-atlasapi/usage/atlas-details.html#hoops-tawny-dragon-brain-atlas) |
11 changes: 10 additions & 1 deletion docs/source/documentation/brainglobe-atlasapi/usage/atlas-details.md
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Expand Up @@ -552,9 +552,18 @@ This is a brain atlas of the blind Mexican cavefish (Astyanax mexicanus) from
see [the blogpost](/blog/cavefish-atlas-added).
This atlas is only available at 2μm resolution:
* `sju_cavefish_2um`

[![View in neuroglancer](https://img.shields.io/badge/Neuroglancer-View%20atlas-blue)](https://neuroglancer-demo.appspot.com/#!https://brainglobe.s3.amazonaws.com/ng_state_files/sju_cavefish.json)

## Lizard
### [Hoops Tawny Dragon Brain Atlas](https://doi.org/10.1007/s00429-021-02282-z)
This is a symmetric atlas of the tawny dragon lizard (Ctenophorus decresii) brain from
[Hoops et al. (2021)](https://doi.org/10.1007/s00429-021-02282-z) with 224 segmentations,
made from averaged MRI images of 13 male tawny dragon lizards.
This atlas is only available at 50μm resolution:
* `hoops_tawny_dragon_50um`
[![View in neuroglancer](https://img.shields.io/badge/Neuroglancer-View%20atlas-blue)](https://neuroglancer-demo.appspot.com/#!https://brainglobe.s3.amazonaws.com/ng_state_files/hoops_tawny_dragon.json)

@IgorTatarnikov IgorTatarnikov Aug 11, 2026

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Neuroglancer was failing to load the template until I scrolled through the AP plane. Have you encountered this, or was it a one off internet thing?

@PolarBean PolarBean Aug 11, 2026

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:o for me it is slow to load but loads without prompting. perhaps related to the 100mb chunks?

@PolarBean PolarBean Aug 11, 2026

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Ill merge and we can continue to discuss




## Amphibian
### [UNAM Axolotl Brain Atlas](https://doi.org/10.1038/s41598-021-89357-3)
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