sequence_analysis

Sequencing analysis tools

Scripts for various kinds of sequencing analyses.

Name		Name	Last commit message	Last commit date
Latest commit History 29 Commits
.DS_Store		.DS_Store
.gitignore		.gitignore
README.md		README.md
align_fasta.sh		align_fasta.sh
align_fastqs_array_lib.py		align_fastqs_array_lib.py
align_paired_fastqs.py		align_paired_fastqs.py
align_unpaired.sh		align_unpaired.sh
basic_utils.py		basic_utils.py
characterize_fasta.py		characterize_fasta.py
check_sanger_sequencing.py		check_sanger_sequencing.py
cleave_and_seq_filter.py		cleave_and_seq_filter.py
countVariantsFromFastqs.py		countVariantsFromFastqs.py
counts_from_fastqs.py		counts_from_fastqs.py
design_adapters.py		design_adapters.py
edittag_barcodes_10nt.xls		edittag_barcodes_10nt.xls
filter_fastqs_by_clusters.py		filter_fastqs_by_clusters.py
filter_fastqs_by_seq.py		filter_fastqs_by_seq.py
get_insert_bed.sh		get_insert_bed.sh
get_insert_bed_and_fasta.sh		get_insert_bed_and_fasta.sh
get_stranded_fastas.sh		get_stranded_fastas.sh
pattern_enrichment.py		pattern_enrichment.py
pe_bams_to_fastas.py		pe_bams_to_fastas.py
pe_bams_to_insert_bed.py		pe_bams_to_insert_bed.py
plot_enrichments.py		plot_enrichments.py
process_cleave_and_seq.py		process_cleave_and_seq.py
run_fastcq_on_dir.py		run_fastcq_on_dir.py
slurmSnake.sbatch		slurmSnake.sbatch
split_libraries_to_directories.py		split_libraries_to_directories.py
trim_and_align_array.sh		trim_and_align_array.sh
trim_and_align_pe.sh		trim_and_align_pe.sh
used_adapter_indexes.txt		used_adapter_indexes.txt

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