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  1. epicv2refine epicv2refine Public

    Deals with replicate probes on the EPICv2 array. Removes low quality-probes (identified by Peters et al., BMC Genomics 2024) and averages the rest.

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  2. getDMPs getDMPs Public

    functions I use frequently to automate DMP analysis

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  3. EPICv2_manifest EPICv2_manifest Public

    Code for re-annotated EPICv2 manifest: https://zenodo.org/records/15181885

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  4. CRC_IRM CRC_IRM Public

    Code for paper https://doi.org/10.1038/s41431-024-01654-3

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