GitHub - bbushnell/IndelFreeAligner-benchmarks: Benchmark scripts for IndelFreeAligner: streaming gapless alignment against terabase-scale references · GitHub

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
01_bowtie_build_scaling.sh		01_bowtie_build_scaling.sh
02_gen_data.sh		02_gen_data.sh
03_bench_bowtie.sh		03_bench_bowtie.sh
04_bench_ifa.sh		04_bench_ifa.sh
05_accuracy.sh		05_accuracy.sh
06_parse_results.sh		06_parse_results.sh
07_memory_search.sh		07_memory_search.sh
08_refseq_demo.sh		08_refseq_demo.sh
09_bench_blast.sh		09_bench_blast.sh
10_refseq_extended.sh		10_refseq_extended.sh
11_blast_refseq.sh		11_blast_refseq.sh
12_accuracy_and_scaling.sh		12_accuracy_and_scaling.sh
13_memory_t64.sh		13_memory_t64.sh
plot_fig1_time_vs_queries.py		plot_fig1_time_vs_queries.py
plot_fig2_mismatch_scaling.py		plot_fig2_mismatch_scaling.py

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Benchmark scripts for IndelFreeAligner: streaming gapless alignment against terabase-scale references

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