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Releases: barricklab/efmcalculator2

v2.0.0-beta.3

v2.0.0-beta.3 Pre-release
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@croots croots released this 15 May 19:15
d18185c

Updates branding to be consistently efmcalculator2

v2.0.0-beta.2

v2.0.0-beta.2 Pre-release
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@croots croots released this 15 May 15:41
a2afa04

What's Changed

Initial public version

  • Detection for Short Repeated Sequences, noncontinuous repeats less than 16 bases in length
  • Rewritten from the ground up
  • Pure python for easy local installation
  • Improved filtering
  • Methods for multi sequence inputs
  • Comprehensive CLI

Full Changelog: v2.0.0-beta.1...v2.0.0-beta.2

V2.0.0-beta.1

V2.0.0-beta.1 Pre-release
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@croots croots released this 13 Feb 17:00
911aa55

EFM Calculator Version 2 beta release. Setting a tag for proper dynamic versioning

  • Rewritten scanning algorithm using base python and vectorized polars for downstream processing
  • Rewritten webapp using Streamlit and Bokeh to provide an up to date interface
  • Simple Repeat Sequence prediction for repeats between 5 and 15 base pairs
  • Added additional quality of life features like CSV input, multi-file input, and annotation information