Convert zernike parameters - #94

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GenevieveBuckley wants to merge 22 commits into

asarnow:masterfrom

GenevieveBuckley:convert_zernike

Commits on Sep 20, 2022

CTF parameter conversion (messy, half finished)
GenevieveBuckley
committed
f5f0add

Commits on Sep 21, 2022

More work on CTF parameter metadata
GenevieveBuckley
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9cfc465
Merge branch 'master' into metadata
GenevieveBuckley
authored
08fa0a5

Commits on Sep 26, 2022

Calculate electron wavelength with more precision
GenevieveBuckley
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baee79a
Fix equations related to defocus
GenevieveBuckley
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2ee74df
Remove variable name 'unit_conversion_odd', simplifies things slightly
GenevieveBuckley
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3efd694
Update Zernike coefficient equations for tilt and trefoil
GenevieveBuckley
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e5d4c02
phi = cs['ctf/phase_shift_rad']
GenevieveBuckley
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2dbbda9
Fix typo in name 'ctf/tetra_A'
GenevieveBuckley
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e9f6668
Convert dataframe columns to string before concatenating Zernike coeffs
GenevieveBuckley
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c86cdd6
Merge pull request #87 from GenevieveBuckley/metadata
asarnow
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4a4a0b2
Zernike coefs concatenated when writing star file
asarnow
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dbbd427
Force 1 to float, remove extra parens
asarnow
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9b4ae52
Checkout pyem/star.py from master
asarnow
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8a255b2
Fix constant references
asarnow
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183787c
Refactor to match other modules (pyem.ctf)
asarnow
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9dcf99e
Arccos to convert % to rad
asarnow
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226fc6a
Refactored conversions
asarnow
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63533a5
-2 * pi for Zernike shift
asarnow
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8e6fadd
Conversion formulas reviewed
asarnow
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d094787
Moved shift conversion before tilt to match e.g. table from wikipedia
asarnow
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d87ada1
Precomputed pre-factors for all conversions
asarnow
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5367513