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update FASTQ/BAM publishing
enhancementNew feature or requestNew feature or requestStatus: Open.#37 In amchakra/tosca;rename pre-mapping param
enhancementNew feature or requestNew feature or requestStatus: Open.#36 In amchakra/tosca;automatically infer strandedness
enhancementNew feature or requestNew feature or requestStatus: Open.#33 In amchakra/tosca;Add support for PE merging
enhancementNew feature or requestNew feature or requestStatus: Open.#27 In amchakra/tosca;Add docs on how to create custom reference
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#15 In amchakra/tosca;