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  • Institute of Cell Biology, University of Bern
  • Bern, Switzerland

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alandolt/README.md

Hi there 👋

Creator of LITOS (LED Illumination Tool for Optogenetic Stimulation), the faro software package for real-time feedback microscopy, as well as the CellZarr pipeline for high throughput single cell data analysis here. If you like optogenetics or single cell data analysis feel free to try these tools out.

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  1. LITOS LITOS Public

    LITOS - an easy-to-use tool for optogenetic cell stimulation

    C 10 3

  2. faro faro Public

    Forked from pertzlab/faro

    Real-time feedback control microscopy using pymmcore as interface

    Jupyter Notebook

  3. pertzlab/CellZarr pertzlab/CellZarr Public

    CellZarr is a reproducible workflow for high-content analysis of live-cell timelapse imaging, processing raw ND2 files to quantitative features for scalable biological analysis.

    Jupyter Notebook 1

  4. organoid-shuffler organoid-shuffler Public

    Automated Organoid Sorting Pipeline, created during EMBO Hackathon Hack your Microscope 2026 in Oeiras, Portugal

    Jupyter Notebook 1