Keywords: Machine Learning · Microbiology · Mass Spectrometry
| Category | Application or Subject | Objective | Link(s) |
|---|---|---|---|
| Research | MSclassifR | Classification of proteomic data using Machine Learning techniques | Link |
| Pneumococcus | Discrimination between Streptococcus pneumoniae and oral streptococci using MALDI-TOF mass spectrometry | Link | |
| FIC calculator | Evaluate the interaction between two antibiotics using the FIC (Fractional Inhibitory Concentration) index | Link | |
| Clostridioides difficile | Visualization of average spectra for peak analysis (hypervirulent vs. non-hypervirulent clones) | Link | |
| Morganella complex | Species identification using MALDI-TOF mass spectrometry | App Code |
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| Enterobacter cloacae complex | Species identification using MALDI-TOF mass spectrometry | App Code |
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| Mycobacterium abscessus | Visualization of average spectra for discriminant peak analysis | Link | |
| qPCR | Classification of qPCR curves for mucormycosis diagnosis | Link | |
| MSI (Microbial System Identification) | Database for bacterial identification using MALDI-TOF mass spectrometry | Link | |
| Teaching | Easybib | Literature review automation using PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) | Link |
| AI training for graduate students | Courses and practicals on artificial intelligence | Repo 1 Repo 2 Repo 3 |
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| Bioinformatics training for graduate students | Courses and practicals – “Bioinformatics Days” workshops | Link |