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CMHonSync

Conducts Cochran-Mantel-Haenszel on *sync files corresponding to pool-sequenced populations with a design file setting which population/column are in the Case group and which ones are in the Control. Every pair of Case population vs. Control population are used as strata.

Depends on

-python3 -numpy -scipy

Usage

python CMHonSync.py Test.sync TestPheno.csv

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Conducts Cochran-Mantel-Haenszel test on pool-sequencing population data (*.sync)

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