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Missing polyA_prediction output
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#396 In ablab/IsoQuant;max_coverage issue for running IsoQuant
performanceIssues related to computational perfromanceIssues related to computational perfromanceStatus: Open.#391 In ablab/IsoQuant;Barcode collision in multi-sample single-cell runs
enhancementNew feature or requestNew feature or requestsingle-cellRelated to single-cell or spatial pipelineRelated to single-cell or spatial pipelineStatus: Open.#388 In ablab/IsoQuant;Running with Parse Biosciences single-cell long-read data using pre-called barcodes
single-cellRelated to single-cell or spatial pipelineRelated to single-cell or spatial pipelineStatus: Open.#387 In ablab/IsoQuant;Best practices for multi-experiment isoform quantification and resolving barcode collisions in single-cell Nanopore datasets
questionFurther information is requestedFurther information is requestedsingle-cellRelated to single-cell or spatial pipelineRelated to single-cell or spatial pipelineStatus: Open.#384 In ablab/IsoQuant;Error: Detected 1 oom_kill event in StepId=537705.batch
third-party problemProblem is related to other tools, libraries, system etcProblem is related to other tools, libraries, system etcStatus: Open.#382 In ablab/IsoQuant;Minimap2 configuration for direct RNA-seq
enhancementNew feature or requestNew feature or requestquestionFurther information is requestedFurther information is requestedStatus: Open.#381 In ablab/IsoQuant;Question: Using IsoQuant after Iso-Seq preprocessing pipeline for bulk long-read RNA-seq
questionFurther information is requestedFurther information is requestedStatus: Open.#380 In ablab/IsoQuant;Potential adverse effect of small chromosome coverage limit
performanceIssues related to computational perfromanceIssues related to computational perfromancequestionFurther information is requestedFurther information is requestedStatus: Open.#372 In ablab/IsoQuant;Error with running visualize.py
visualizerRelates to visualization moduleRelates to visualization moduleStatus: Open.#369 In ablab/IsoQuant;wrong gene_id assignment in transcript_models.gtf
algorithmIssue requires algorithmic improvementIssue requires algorithmic improvementweird resultsSomething looks odd in the resulting filesSomething looks odd in the resulting filesStatus: Open.#363 In ablab/IsoQuant;Question regarding parallelisation in IsoQuant
performanceIssues related to computational perfromanceIssues related to computational perfromanceStatus: Open.#359 In ablab/IsoQuant;