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1. rskit rskit Public

   rnaseq pipeline (STAR + Salmon + pyDEseq2 +pyWGCNA)

   Python

2. pgkit pgkit Public

   Pan Gene Family analysis and visualization tools

   Python 1

3. gffsub gffsub Public

   A fast GFF3/GTF extraction and filtering tool written in C++.

   C++

4. ggPopi ggPopi Public

   ggpop: tidy style visualization of ggplot extension of population genomics

   R

5. haplokit haplokit Public

   CLI-first haplotype viewer with bcftools-like selectors, C++ backend acceleration, and Python plotting.

   Python

6. kbsa kbsa Public

   k-mer Bulked Segregant Analysis: reference-free QTL mapping from pooled sequencing

   C++