NanoRepeat-1.8.3

1. fixed bug for checking motifs in reference sequence
2. add reference path for cram files
3. use pyminimap2 to replace minimap2

NanoRepeat-1.8.2

Fix one bug for the '--no_details' option.

NanoRepeat-1.8.1

1. replace samtools with pysam
2. improved I/O performance

NanoRepeat-1.8

In this version, we added a new output format, which is a tab-delimited text file summarizing repeat quantification results of all regions.

NanoRepeat-1.7

adding fast mode

NanoRepeat-1.6

Improved speed and memory use for STRs with large repeat sizes.

NanoRepeat-1.5

fixed one bug for alignment of FASTA input files.

NanoRepeat-1.4.0

1. add function to check if the reference sequence contains the correct repeat motif.
2. enable pip install NanoRepeat.
3. supplied Tandem Repeat Finder annotation of tandem repeats (repeat unit length in 2-100 bp)

NanoRepeat-1.3

In previous versions, the output file name contained the repeat unit sequence, which may exceed the max length of the OS if the repeat unit is too long.
This version fixed this bug. If the repeat unit is more than 30bp, only part of the sequence will be displayed in the output file names.

NanoRepeat-1.2

1. Updated documentation
2. Changed output file formats
3. Unified API for nanoRepeat.py and nanoRepeat-joint.py
4. Updated example datasets