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1. PyTorch101 PyTorch101 Public

   A hands-on PyTorch crash course from tensors to transfer learning, built on Kaggle and synced to GitHub. Designed for computational biologists and bioinformatics students.

   Python 1

2. rag-basic-to-agentic rag-basic-to-agentic Public

   A progressive, script-based journey through Retrieval-Augmented Generation, from basic RAG to agentic, self-reflecting systems. Free-tier cloud stack, zero local model downloads.

   Python 1

3. Mapping-the-Single-Cell-RNA-Seq-Trajectory-Landscape-Crosstalk-in-Liver-Cancer Mapping-the-Single-Cell-RNA-Seq-Trajectory-Landscape-Crosstalk-in-Liver-Cancer Public

   Forked from NonZeroExitAli/Mapping-the-Single-Cell-RNA-Seq-Trajectory-Landscape-Crosstalk-in-Liver-Cancer

   Mapping the Single-Cell RNA-Seq Trajectory Landscape of T and B Cells Crosstalk in Liver Cancer investigates the tumor microenvironment (TME) of hepatocellular carcinoma (HCC), focusing on interact…

   R

4. MoChAP-Modification-of-ChIP-Analysis-Pipeline MoChAP-Modification-of-ChIP-Analysis-Pipeline Public

   Forked from NonZeroExitAli/MoChAP-Modification-of-ChIP-Analysis-Pipeline

   The pipeline integrates Smith-Waterman local alignment for sequence similarities, a motif analysis algorithm for conserved motif detection with visualizations, and a CNN Peak Caller for ChIP-seq pe…

   Python

5. Motif-Discovery-Beyond-Substrings-MoDisST Motif-Discovery-Beyond-Substrings-MoDisST Public

   Forked from NonZeroExitAli/Motif-Discovery-Beyond-Substrings-MoDisST

   Motif Discovery Beyond Substrings (MoDisST) is a bioinformatics tool designed to efficiently identify motifs in DNA and protein sequences using Ukkonen's suffix tree algorithm. By leveraging the li…

   C++

6. MRI-Alzheimers-CNN MRI-Alzheimers-CNN Public

   Forked from Toqa277/MRI-Alzheimers-CNN

   This repository presents "MRI-Based Classification of Alzheimer's Stages Using 3D, 2D, and Transfer Learning CNN Models." Using the ADNI dataset (32,559 MRI scans), it classifies AD stages (CN, MCI…

   Jupyter Notebook