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SNPKIT

Synopsis

A Modular/Scalable workflow for Microbial Variant Calling, Recombination detection and Phylogenetic tree reconstruction that can be easily deployed for infectious disease outbreak investigations and other clinical microbiology projects.

Fork Notice:

This wiki was forked from https://github.com/alipirani88/snpkit.wiki.git on 12/30/2024 by Kyle Gontjes, using methods discussed here https://stackoverflow.com/questions/7197937/on-github-can-i-fork-just-a-wiki/77294223#77294223.