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We rise by lifting others 🍥 Perfectly Imperfect and Enough
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We rise by lifting others 🍥 Perfectly Imperfect and Enough
39 followers · 72 following

Achievements

Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: Pull Sharkx2

Achievements

Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: Pull Sharkx2

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Sdamirsa/README.md

Hi there This is Amir (Seyed Amir Ahmad Safavi-Naini, 👯 I would challenge you for the longest name ever). I am an MD-MBA physician-researcher, now based in Bern at the Department of Cardiology and Digital Medicine (AI-CVM, Inselspital), building Agentic AI systems that curate, structure, and store biomedical data, and bake them for clinicians in their own taste. I previously researched LLM capabilities in gastroenterology at D3M, Mount Sinai (USA), and before that, built ✨ AI/ML/DL/NN (or any other fancy abbreviation) solutions for gastroenterology practice at RIGLD, Iran. I code in Python and R to do some whimsical things and finally get them published somewhere (isn't that the ultimate goal of a researcher?). I believe in open science, and I will not bury my data with me, I promise.

Digital Medicine · Agentic AI · Medical Data Curation & Big Data · Fair Commercialization of Data

👨🏻‍💻 Stack

LangChain ecosystem (LangGraph, LangSmith, LiteLLM) · MONAI · Streamlit · scikit-learn · pandas/NumPy · VTK

🩻 Medical Imaging

3D Slicer DICOM XNAT MONAI

🤖 Agentic AI

💻 GitHub Profile Stats

Amir's Github Stats   sdamirsa
Note: Top languages is only a metric of the languages my public code consists of and doesn't reflect experience or skill level.

🤝 Connect With Me

Good unite hearts, cover all, break none.

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  1. PanCanAID PanCanAID Public

    Pancreas Cancer AI-Driven Diagnosis in CT scan and EUS Imaging: A protocol for an Observational Multicentric Ambispective Study

    Jupyter Notebook

  2. Tehran_COVID_Cohort Tehran_COVID_Cohort Public

    Code for data extraction and analysis of a COVID project with 10,000 participants (COVID-19 inpatients)

    Python

  3. HappyTreeResearchFriends HappyTreeResearchFriends Public

    Here I will store some learning contents, learning pathways, and opportunities so that I can re-use them. Happy Tree Research Friends is a group that I started three years ago with my mentee and fr…

    8 7

  4. ParsBench/ParsBench-Medical ParsBench/ParsBench-Medical Public

    MedQA-but-better-yield (MedQA-BBY) is build on top of MedQA dataset but enriched with labels, as well as two correct options and one negative point option, and three 0 point options. The labels inc…

    Jupyter Notebook 5 8

  5. awesome_extraction_with_LLM_ExtraCTOps awesome_extraction_with_LLM_ExtraCTOps Public

    ExtraCTOps is a modular framework for extracting, evaluating, and refining structured data from unstructured text using LLMs and Pydantic — with built-in tools for prompt tuning, agentic schema des…

    Python 3

  6. ParsBench-Medical-en ParsBench-Medical-en Public

    This repository contains multiple-choice questions and real-world scenarios for benchmarking large language models in Persian (Farsi) and English. The content is designed to evaluate the performanc…

    Python 1