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Bump the dependencies group across 1 directory with 5 updates#678

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Bump the dependencies group across 1 directory with 5 updates#678
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Bumps the dependencies group with 5 updates in the / directory:

Package From To
prefix-dev/setup-pixi 0.9.5 0.9.6
scitools/workflows/.github/workflows/ci-manifest.yml 2026.05.0 2026.06.0
scitools/workflows/.github/workflows/ci-template-check.yml 2026.05.0 2026.06.0
codecov/codecov-action 6.0.1 7.0.0
pypa/cibuildwheel 3.4.1 4.0.0

Updates prefix-dev/setup-pixi from 0.9.5 to 0.9.6

Release notes

Sourced from prefix-dev/setup-pixi's releases.

v0.9.6

What's Changed

✨ New features

⬆️ Dependency updates

🤷🏻 Other changes

New Contributors

Full Changelog: prefix-dev/setup-pixi@v0.9.5...v0.9.6

Commits

Updates scitools/workflows/.github/workflows/ci-manifest.yml from 2026.05.0 to 2026.06.0

Release notes

Sourced from scitools/workflows/.github/workflows/ci-manifest.yml's releases.

2026.06.0

What's Changed

Full Changelog: SciTools/workflows@2026.05.0...2026.06.0

Commits

Updates scitools/workflows/.github/workflows/ci-template-check.yml from 2026.05.0 to 2026.06.0

Release notes

Sourced from scitools/workflows/.github/workflows/ci-template-check.yml's releases.

2026.06.0

What's Changed

Full Changelog: SciTools/workflows@2026.05.0...2026.06.0

Commits

Updates codecov/codecov-action from 6.0.1 to 7.0.0

Release notes

Sourced from codecov/codecov-action's releases.

v7.0.0

⚠️ Due to migration issues with keybase, we are unable to update our keys under the codecovsecurity account. We have deleted the account and are using codecovsecops with the original gpg key

What's Changed

Full Changelog: codecov/codecov-action@v6.0.1...v7.0.0

v6.0.2

This is a copy of the v7.0.0 release to make updates easier

What's Changed

Full Changelog: codecov/codecov-action@v6.0.1...v6.0.2

Changelog

Sourced from codecov/codecov-action's changelog.

v5.5.2

What's Changed

Full Changelog: https://github.com/codecov/codecov-action/compare/v5.5.1..v5.5.2

v5.5.1

What's Changed

Full Changelog: https://github.com/codecov/codecov-action/compare/v5.5.0..v5.5.1

v5.5.0

What's Changed

Full Changelog: https://github.com/codecov/codecov-action/compare/v5.4.3..v5.5.0

v5.4.3

What's Changed

Full Changelog: https://github.com/codecov/codecov-action/compare/v5.4.2..v5.4.3

v5.4.2

... (truncated)

Commits

Updates pypa/cibuildwheel from 3.4.1 to 4.0.0

Release notes

Sourced from pypa/cibuildwheel's releases.

v4.0.0

See @​henryiii's release post for more info on new features!

  • 🌟 Adds wheel auditing with abi3audit as a default after the repair step, with new audit-requires and audit-command options (#2805)

  • 🌟 Adds pyemscripten platform tag support (PEP 783), updates Pyodide to 314.0.0a2, and adds a pyodide-eol enable flag for building end-of-life Pyodide versions (#2812, #2848)

  • 🌟 Sets up delvewheel as the default repair-wheel-command for Windows, so extension module DLLs are now bundled automatically. Skip by setting it to empty if not needed. (#2831)

  • ✨ Adds CPython 3.15 support, under the enable option cpython-prerelease. This version of cibuildwheel uses 3.15.0b2. (#2833, #2850)

    While CPython is in beta, the ABI can change, so your wheels might not be compatible with the final release. For this reason, we don't recommend distributing wheels until RC1, at which point 3.15 will be available in cibuildwheel without the flag.

  • ✨ Adds CPython 3.15 support for iOS and Android (#2857, #2858)

  • ✨ Adds Android improvements for building NumPy and related packages, including auditwheel support, pkg-config and Fortran configuration, and the xbuild-files option (#2695)

  • ✨ Adds CIBUILDWHEEL_BUILD_IDENTIFIER environment variable set to the current build identifier (e.g. cp311-manylinux_x86_64) during per-build steps (#2872)

  • ✨ Adds {project} and {package} placeholders to config-settings (#2827)

  • ⚠️ Drops support for Python 3.8 (#2686)

  • ⚠️ Removes the experimental CPython 3.13 free-threading builds and the cpython-freethreading enable option. CPython 3.14+ free-threading support remains available without the enable flag. (#2684)

  • ⚠️ Drops support for Cirrus CI, which is shutting down June 1, 2026 (#2817)

  • ⚠️ Drops GraalPy 3.11 (gp311) support, as agreed in #2741, and removes GraalPy 24-only workarounds (#2895)

  • 🔐 Adds SHA256 verification for direct downloads of Python interpreters, virtualenv, and python-build-standalone assets (#2873)

  • 🔐 Adds tarfile extraction filter for safe archive extraction (#2856)

  • 🐛 Fixes UV_PYTHON not being set for before-build on Linux when using uv as the build-frontend (#2830)

  • 🐛 Fixes detection of musl libc when downloading python-build-standalone, which previously always selected the gnu asset on musl hosts like Alpine (#2889)

  • 🐛 Fixes config-settings expansion when {project} or {package} contains spaces or backslashes (#2886)

  • 🐛 Prevents deadlock when linux32 fails and forwards platform args to the sanity check (#2880, #2888)

  • 🐛 Fixes container resource leaks on start failure and during teardown (#2879, #2887)

  • 🐛 Removes potential partial cache-population in case of error (#2892)

  • 🐛 Raises a clear error when ANDROID_API_LEVEL is not an integer (#2891)

  • 🐛 Replaces assert with proper exception in python-build-standalone (#2859)

  • 🐛 Uses ConfigurationError when package_dir is outside cwd instead of a generic Exception (#2898)

  • 🛠 Updates dependencies and container pins (#2893, #2882, #2874, #2868, #2862, #2884, #2845, #2837, #2818, #2810, #2838, #2813)

  • 🛠 Updates Android to Python 3.13.13 and 3.14.4 (#2821)

  • 🛠 Applies Pyodide-specific patches to the Emscripten toolchain installation (#2800)

  • 🛠 Uses python -V -V for Windows build diagnostics (#2832)

  • 🛠 Simplifies pinned container image lookup (#2897)

  • 🛠 Minor fixups across error messages, OCI container, and options (#2860)

  • 💼 Adds PEP 723 metadata for bin/ scripts and drops the bin dependency group (#2819)

  • 💼 Improves Azure test reliability with retries and caching (#2890)

  • 💼 Fixes Windows GitLab CI test running (#2870)

  • 💼 Updates CI action pins and dev dependencies (#2902, #2867, #2851, #2843, #2826, #2823, #2820, #2807)

  • 💼 Adds agent and copilot setup files (#2861)

  • 💼 Uses if TYPE_CHECKING: blocks (#2866, #2864)

  • 🧪 Fixes Android tests using the uv frontend (#2809)

  • 🧪 Fixes the update-dependencies workflow to use uv to run nox (#2808)

  • 🧪 Adds unit tests for OCIContainer._get_platform_args (#2878)

  • 📚 Updates documentation for delvewheel as the default Windows repair-wheel-command, including the build diagram, schema defaults, and legal note (#2877, #2853, #2891)

  • 📚 Documents platform-specific before-build configuration (#2834)

  • 📚 Updates the "How it works" diagram with details of Android, iOS, and Pyodide builds (#2816)

  • 📚 Adds Pyodide icon and regenerates working examples data for Android, iOS, and Pyodide (#2815, #2811)

  • 📚 Adds intersphinx support for external documentation linking (#2871)

  • 📚 Adds instructions for building CUDA wheels and fixes manylinux container references in FAQ (#2896, #2900)

... (truncated)

Changelog

Sourced from pypa/cibuildwheel's changelog.

v4.0.0

7 June 2026

See @​henryiii's release post for more info on new features!

  • 🌟 Adds wheel auditing with abi3audit as a default after the repair step, with new audit-requires and audit-command options (#2805)

  • 🌟 Adds pyemscripten platform tag support (PEP 783), updates Pyodide to 314.0.0a2, and adds a pyodide-eol enable flag for building end-of-life Pyodide versions (#2812, #2848)

  • 🌟 Sets up delvewheel as the default repair-wheel-command for Windows, so extension module DLLs are now bundled automatically. Skip by setting it to empty if not needed. (#2831)

  • ✨ Adds CPython 3.15 support, under the enable option cpython-prerelease. This version of cibuildwheel uses 3.15.0b2. (#2833, #2850)

    While CPython is in beta, the ABI can change, so your wheels might not be compatible with the final release. For this reason, we don't recommend distributing wheels until RC1, at which point 3.15 will be available in cibuildwheel without the flag.

  • ✨ Adds CPython 3.15 support for iOS and Android (#2857, #2858)

  • ✨ Adds Android improvements for building NumPy and related packages, including auditwheel support, pkg-config and Fortran configuration, and the xbuild-files option (#2695)

  • ✨ Adds CIBUILDWHEEL_BUILD_IDENTIFIER environment variable set to the current build identifier (e.g. cp311-manylinux_x86_64) during per-build steps (#2872)

  • ✨ Adds {project} and {package} placeholders to config-settings (#2827)

  • ⚠️ Drops support for Python 3.8 (#2686)

  • ⚠️ Removes the experimental CPython 3.13 free-threading builds and the cpython-freethreading enable option. CPython 3.14+ free-threading support remains available without the enable flag. (#2684)

  • ⚠️ Drops support for Cirrus CI, which is shutting down June 1, 2026 (#2817)

  • ⚠️ Drops GraalPy 3.11 (gp311) support, as agreed in #2741, and removes GraalPy 24-only workarounds (#2895)

  • 🔐 Adds SHA256 verification for direct downloads of Python interpreters, virtualenv, and python-build-standalone assets (#2873)

  • 🔐 Adds tarfile extraction filter for safe archive extraction (#2856)

  • 🐛 Fixes UV_PYTHON not being set for before-build on Linux when using uv as the build-frontend (#2830)

  • 🐛 Fixes detection of musl libc when downloading python-build-standalone, which previously always selected the gnu asset on musl hosts like Alpine (#2889)

  • 🐛 Fixes config-settings expansion when {project} or {package} contains spaces or backslashes (#2886)

  • 🐛 Prevents deadlock when linux32 fails and forwards platform args to the sanity check (#2880, #2888)

  • 🐛 Fixes container resource leaks on start failure and during teardown (#2879, #2887)

  • 🐛 Removes potential partial cache-population in case of error (#2892)

  • 🐛 Raises a clear error when ANDROID_API_LEVEL is not an integer (#2891)

  • 🐛 Replaces assert with proper exception in python-build-standalone (#2859)

  • 🐛 Uses ConfigurationError when package_dir is outside cwd instead of a generic Exception (#2898)

  • 🛠 Updates dependencies and container pins (#2893, #2882, #2874, #2868, #2862, #2884, #2845, #2837, #2818, #2810, #2838, #2813)

  • 🛠 Updates Android to Python 3.13.13 and 3.14.4 (#2821)

  • 🛠 Applies Pyodide-specific patches to the Emscripten toolchain installation (#2800)

  • 🛠 Uses python -V -V for Windows build diagnostics (#2832)

  • 🛠 Simplifies pinned container image lookup (#2897)

  • 🛠 Minor fixups across error messages, OCI container, and options (#2860)

  • 💼 Adds PEP 723 metadata for bin/ scripts and drops the bin dependency group (#2819)

  • 💼 Improves Azure test reliability with retries and caching (#2890)

  • 💼 Fixes Windows GitLab CI test running (#2870)

  • 💼 Updates CI action pins and dev dependencies (#2902, #2867, #2851, #2843, #2826, #2823, #2820, #2807)

  • 💼 Adds agent and copilot setup files (#2861)

  • 💼 Uses if TYPE_CHECKING: blocks (#2866, #2864)

  • 🧪 Fixes Android tests using the uv frontend (#2809)

  • 🧪 Fixes the update-dependencies workflow to use uv to run nox (#2808)

  • 🧪 Adds unit tests for OCIContainer._get_platform_args (#2878)

  • 📚 Updates documentation for delvewheel as the default Windows repair-wheel-command, including the build diagram, schema defaults, and legal note (#2877, #2853, #2891)

  • 📚 Documents platform-specific before-build configuration (#2834)

  • 📚 Updates the "How it works" diagram with details of Android, iOS, and Pyodide builds (#2816)

... (truncated)

Commits
  • f03ac76 Bump version: v4.0.0
  • 557c5f6 feat: remove GraalPy 3.11 (gp311) support (#2895)
  • 70975c2 chore: use ConfigurationError when package_dir is outside cwd (#2898)
  • e2f143c chore(deps): bump docker/setup-qemu-action from 4.0.0 to 4.1.0 in the actions...
  • 866ae74 docs: fix CUDA manylinux container references in FAQ (#2900)
  • 84b518a chore: simplify pinned image lookup (#2897)
  • 785d812 docs: add instructions for building CUDA wheels (#2896)
  • f6bd047 Bump version: v4.0.0rc2
  • 6cd2d19 fix: remove potential partial cache-population in case of error (#2892)
  • cdb170b [Bot] Update dependencies (#2893)
  • Additional commits viewable in compare view

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@dependabot
Bump the dependencies group across 1 directory with 5 updates
5876f04 
Bumps the dependencies group with 5 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [prefix-dev/setup-pixi](https://github.com/prefix-dev/setup-pixi) | `0.9.5` | `0.9.6` |
| [scitools/workflows/.github/workflows/ci-manifest.yml](https://github.com/scitools/workflows) | `2026.05.0` | `2026.06.0` |
| [scitools/workflows/.github/workflows/ci-template-check.yml](https://github.com/scitools/workflows) | `2026.05.0` | `2026.06.0` |
| [codecov/codecov-action](https://github.com/codecov/codecov-action) | `6.0.1` | `7.0.0` |
| [pypa/cibuildwheel](https://github.com/pypa/cibuildwheel) | `3.4.1` | `4.0.0` |



Updates `prefix-dev/setup-pixi` from 0.9.5 to 0.9.6
- [Release notes](https://github.com/prefix-dev/setup-pixi/releases)
- [Commits](prefix-dev/setup-pixi@1b2de7f...5185adf)

Updates `scitools/workflows/.github/workflows/ci-manifest.yml` from 2026.05.0 to 2026.06.0
- [Release notes](https://github.com/scitools/workflows/releases)
- [Commits](SciTools/workflows@2026.05.0...2026.06.0)

Updates `scitools/workflows/.github/workflows/ci-template-check.yml` from 2026.05.0 to 2026.06.0
- [Release notes](https://github.com/scitools/workflows/releases)
- [Commits](SciTools/workflows@2026.05.0...2026.06.0)

Updates `codecov/codecov-action` from 6.0.1 to 7.0.0
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](codecov/codecov-action@e79a696...fb8b358)

Updates `pypa/cibuildwheel` from 3.4.1 to 4.0.0
- [Release notes](https://github.com/pypa/cibuildwheel/releases)
- [Changelog](https://github.com/pypa/cibuildwheel/blob/main/docs/changelog.md)
- [Commits](pypa/cibuildwheel@v3.4.1...v4.0.0)

---
updated-dependencies:
- dependency-name: prefix-dev/setup-pixi
  dependency-version: 0.9.6
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: scitools/workflows/.github/workflows/ci-manifest.yml
  dependency-version: 2026.06.0
  dependency-type: direct:production
  dependency-group: dependencies
- dependency-name: scitools/workflows/.github/workflows/ci-template-check.yml
  dependency-version: 2026.06.0
  dependency-type: direct:production
  dependency-group: dependencies
- dependency-name: codecov/codecov-action
  dependency-version: 7.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: dependencies
- dependency-name: pypa/cibuildwheel
  dependency-version: 4.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added Bot A bot generated issue/pull-request New: Pull Request Highlight a new community raised pull-request labels Jun 11, 2026
scitools-ci[bot]
scitools-ci Bot reviewed Jun 11, 2026
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Templating

Version numbers are not typically covered by templating. It is expected that this PR is 100% about advancing version numbers, which would not require any templating follow-up. Please double-check for any other changes that might be suitable for templating.

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