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@SahakyanLab

SahakyanLab

Integrative Computational Biology and Machine Learning Laboratory, University of Oxford

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  1. ROptimus ROptimus Public

    ROptimus: a parallel general purpose adaptive optimisation engine

    R 4

  2. GenomicContactDynamics GenomicContactDynamics Public

    Code for the analyses and simulations involved in the Genomic Contact Dynamics research.

    R 4 1

  3. kmeRtone kmeRtone Public

    Multi-purpose and transferrable k-meric enrichment/depletion analysis software.

    R 1

  4. GenomeAssembler_dev GenomeAssembler_dev Public

    Code to simulate the generation of sequencing reads, to de novo assemble a genome, and to calculate breakage propensity scores.

    R 1

  5. DNAfrAIlib DNAfrAIlib Public

    DNA fragility associated k-meric features for genomic sequence-driven machine learning.

    R 1

  6. GenomicPR2SimsWebApp GenomicPR2SimsWebApp Public

    Shiny interface and simple ODE-based simulation code for the genomic base composition.

    R

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