dataset: DepMap#70
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Co-authored-by: Neha Talluri <78840540+ntalluri@users.noreply.github.com>
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this is only in github actions
Co-authored-by: Neha Talluri <78840540+ntalluri@users.noreply.github.com>
to move to web
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| interactome_df = pandas.read_csv(depmap_directory / "raw" / "9606.protein.physical.links.full.txt", sep=" ") | ||
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| interactome_df = interactome_df.rename(columns={"protein1": "Interactor1", "protein2": "Interactor2", "combined_score": "Weight"}) | ||
| interactome_df = interactome_df[interactome_df["Weight"] > 1] |
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| interactome_df = interactome_df[interactome_df["Weight"] > 1] | |
| interactome_df = interactome_df[interactome_df["Weight"] > 1] | |
| interactome_df["Weight"] = interactome_df["Weight"].div(1000) # combined_scores are between 1-1000: we normalize between 0-1 |
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