Genotypes

• Input

  • [../source/Genotype/Hybrids_G2F_Genotype_Data_All_Years.vcf.zip]

• Output

  • output/GENO.csv
  • output/MAP.csv

• Code

  • code/1_SNP_filter_codify.sub
  • code/2_LD_prune_genotypes.R

Running the code in the terminal

cd pipeline_ecov/2_genotypes/code
sbatch 1_SNP_filter_codify.sub
sbatch 2_LD_prune_genotypes.R

<- Back