Develop#76
Merged
Merged
Conversation
…quired; updated combining function to take into account minimum info; updated several tests to test for the newer less required field files;
…ted tests; updated scripts;
… utilities to help with building a minimal PMO;
…data; validate both the no meta data and with specimen meta;
…spec info if not given in the merge_pmo function;
…ult to exporting seq rather than the mhap_id; changed name of the merging function; adding being able to supply specimen_info but not library_sample_info as long as the name match detected_microhaplotypes;
… global __schema__ so default only has to be changed in 1 place;
…manual Feature/fix doc strings add manual
updated code for more minimum field requirements;
Add action to test docs build on every PR
…their names are not to link with in the associated data; fixed issue with read counts per stage for allowing missing bio run info;
…_in_merge_pmo Same fixes for error message and read counts by stage
nickjhathaway
approved these changes
Jun 4, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.