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Major changes - #34

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zhaoc1 wants to merge 8 commits into

PennChopMicrobiomeProgram:masterfrom

Commits on Jan 17, 2018

update README for single end read
Zhao
committed
68ac2f8
update main.py with single end option
Zhao
committed
6c2e242
update tools.py for single end option
Zhao
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81b4100
use python from the environment
Zhao
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2e377b1
update test_main with config file option
Zhao
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3b40968
update test_utils for python3
Zhao
committed
48e235f
benchmark worm from Celeste
Zhao
committed
098ff77

Commits on Jan 19, 2018

take kyle's advice about str(None)
Zhao
committed
47d3931