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Truncated HA1 Coding Sequence in H3N2 Concatenated genome build vs HA Segment build

Status: Open.

Bug

#28 In Pekosz-Lab/nextstrain;

· elginakin opened on Apr 27, 2026

Feature Proposal: color by total number of available genome segments within each build family (H1N1, H3N2, B/Vic)

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

Feature

#20 In Pekosz-Lab/nextstrain;

· elginakin opened on Jan 29, 2026

Feature Proposal: Add HA/NA N-Linked Glycosylation Metadata to Nextstrain Builds

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

rotation-projectAn ideal project for a rotation student.An ideal project for a rotation student.

Status: Open.

Feature

#19 In Pekosz-Lab/nextstrain;

· elginakin opened on Jan 26, 2026

incomplete appending of full subtype to A/H1N1 or A/H3N2 viruses in absence of NA sequences

bugSomething isn't workingSomething isn't working

priority: HIGHHIGH priority action itemHIGH priority action item

Status: Open.

Bug

#18 In Pekosz-Lab/nextstrain;

· anniewerner opened on Jan 23, 2026

Refactor fludb and flusort organization in the scripts folder

Status: Open.

#17 In Pekosz-Lab/nextstrain;

· elginakin opened on Nov 29, 2025

Enhancement Local Snapshots

enhancementNew feature or requestNew feature or request

Status: Open.

#15 In Pekosz-Lab/nextstrain;

· elginakin opened on Nov 7, 2025

Accessibility Enhancement: Consider uploading auspice json files to this repository

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In Pekosz-Lab/nextstrain;

· elginakin opened on Oct 8, 2025

fludb - add: authors, originating lab, submitting lab

Status: Open.

#12 In Pekosz-Lab/nextstrain;

· elginakin opened on Sep 1, 2025

Add PB1 F-2 coding sequences to concatenated genbank

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

priority: LOWlow priority action itemlow priority action item

Status: Open.

Feature

#10 In Pekosz-Lab/nextstrain;

· elginakin opened on Feb 23, 2025

fludb - upload_gisaid.py does not append subtype designations for H3N2 and some H1N1 subtypes

bugSomething isn't workingSomething isn't working

invalidThis doesn't seem rightThis doesn't seem right

Status: Open.

#9 In Pekosz-Lab/nextstrain;

· elginakin opened on Jan 5, 2025

flusort.py duplicate sequence_ID handeling

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#8 In Pekosz-Lab/nextstrain;

· elginakin opened on Dec 23, 2024

fludb - add feature - automatically split location column into region, country, division, location_detailed

enhancementNew feature or requestNew feature or request

priority: LOWlow priority action itemlow priority action item

Status: Open.

#7 In Pekosz-Lab/nextstrain;

· elginakin opened on Dec 2, 2024