236 refactor observation

.github/workflows/ubuntu.yml

@@ -29,6 +29,7 @@ jobs:
         mtln: ["ON", "OFF"]
         hdf: ["ON"]
         double-precision: ["OFF"]
+        new-output-module: ["OFF","ON"]
 
         include:
           # Disable by lack of space on github action
@@ -89,13 +90,15 @@ jobs:
           -DSEMBA_FDTD_ENABLE_MPI=${{matrix.mpi}} \
           -DSEMBA_FDTD_ENABLE_HDF=${{matrix.hdf}} \
           -DSEMBA_FDTD_ENABLE_MTLN=${{matrix.mtln}} \
-          -DSEMBA_FDTD_ENABLE_DOUBLE_PRECISION=${{matrix.double-precision}}
+          -DSEMBA_FDTD_ENABLE_DOUBLE_PRECISION=${{matrix.double-precision}} \
+          -DSEMBA_FDTD_ENABLE_OUTPUT_MODULE=${{matrix.new-output-module}}
         cmake --build build -j
 
     - name: Run unit tests 
       run: build/bin/fdtd_tests
 
     - name: Run python tests
+      if: matrix.new-output-module=='OFF'
       env:
         SEMBA_FDTD_ENABLE_MPI: ${{ matrix.mpi }}
         SEMBA_FDTD_ENABLE_MTLN: ${{ matrix.mtln }}

.gitmodules

@@ -20,4 +20,4 @@
 
 [submodule "external/googletest"]
 	path = external/googletest
-	url = https://github.com/OpenSEMBA/googletest.git
+	url = https://github.com/OpenSEMBA/googletest.git

CMakeLists.txt

@@ -16,7 +16,7 @@ option(SEMBA_FDTD_ENABLE_MPI "Use MPI" OFF)
 option(SEMBA_FDTD_ENABLE_HDF "Use HDF" ON)
 option(SEMBA_FDTD_ENABLE_MTLN "Use MTLN" ON)
 option(SEMBA_FDTD_ENABLE_SMBJSON "Use smbjson" ON)
-option(SEMBA_FDTD_ENABLE_DOUBLE_PRECISION "Use double precision (CompileWithReal8)" OFF)
+option(SEMBA_FDTD_ENABLE_DOUBLE_PRECISION "Use double precision (CompileWithReal8)" ON)
 
 option(SEMBA_FDTD_ENABLE_TEST "Compile tests" ON)
 
@@ -27,12 +27,26 @@ option(SEMBA_FDTD_EXECUTABLE "Compiles executable" ON)
 option(SEMBA_FDTD_MAIN_LIB "Compiles main library" ON)
 option(SEMBA_FDTD_COMPONENTS_LIB "Compiles components library" ON)
 option(SEMBA_FDTD_OUTPUTS_LIB "Compiles outputs library" ON)
+
+option(SEMBA_FDTD_ENABLE_OUTPUT_MODULE "Use new output module" ON)
+
 # Compilation defines.
 if(CMAKE_BUILD_TYPE MATCHES "Release" OR CMAKE_BUILD_TYPE MATCHES "release" )
 	add_definitions(-DCompileWithRelease)
 else()
 	add_definitions(-DCompileWithDebug)
 endif()
+if (CMAKE_SYSTEM_NAME STREQUAL "Windows")
+add_compile_definitions(__WIN32__)
+elseif (CMAKE_SYSTEM_NAME STREQUAL "Darwin")
+add_compile_definitions(__APPLE__)
+elseif (CMAKE_SYSTEM_NAME STREQUAL "Linux")
+add_compile_definitions(__linux__)
+endif()
+
+if(SEMBA_FDTD_ENABLE_OUTPUT_MODULE)
+	add_definitions(-DCompileWithNewOutputModule)
+endif()
 if(SEMBA_FDTD_ENABLE_SMBJSON)
 	add_definitions(-DCompileWithSMBJSON)
 endif()
@@ -49,6 +63,14 @@ add_definitions(
 	-DCompileWithOpenMP
 )
 
+if(CMAKE_Fortran_COMPILER_ID MATCHES "GNU")
+	add_definitions(-DGNUCompiler)
+endif()
+if(CMAKE_Fortran_COMPILER_ID MATCHES "IntelLLVM")
+	add_definitions(-DIFXCompiler)
+endif()
+
+
 include("${CMAKE_CURRENT_SOURCE_DIR}/set_precompiled_libraries.cmake")
 
 if (CMAKE_SYSTEM_NAME MATCHES "Linux")
@@ -180,6 +202,15 @@ if (SEMBA_FDTD_ENABLE_MTLN)
 	endif()
 endif()
 
+add_subdirectory(src_utils)
+
+if (SEMBA_FDTD_ENABLE_OUTPUT_MODULE)
+	add_subdirectory(src_output)
+	set(OUTPUT_LIBRARIES fdtd-output)
+	set(VTK_API_LIBRARIES vtkAPI)
+	set(XDMF_API_LIBRARIES xdmfAPI)
+endif()
+
 add_subdirectory(src_conformal)
 set(CONFORMAL_LIBRARIES conformal)
 
@@ -188,6 +219,8 @@ if (SEMBA_FDTD_ENABLE_TEST)
 	add_subdirectory(test)
 endif()
 
+
+
 if(SEMBA_FDTD_COMPONENTS_LIB)
 	add_library(semba-components
 		"src_main_pub/anisotropic.F90"
@@ -250,7 +283,11 @@ if(SEMBA_FDTD_MAIN_LIB)
 		"src_main_pub/timestepping.F90"
 	)
 	target_link_libraries(semba-main
-		semba-outputs 
+		semba-outputs
+		fdtd-utils
+		${OUTPUT_LIBRARIES}
+		${VTK_API_LIBRARIES}
+		${XDMF_API_LIBRARIES}
 		${SMBJSON_LIBRARIES} 
 		${MTLN_LIBRARIES})
 endif()

setup_intel_build.sh

@@ -0,0 +1,53 @@
+#!/bin/bash
+# ========================================================
+# Script para limpiar CMake y configurar Intel 2025.3
+# ========================================================
+
+# --------------------------
+# Configuración del proyecto
+# --------------------------
+SRC_DIR="/home/username/elemwave/fdtd"
+BUILD_DIR="$SRC_DIR/build-dbg"
+
+# --------------------------
+# Carga Intel oneAPI 2025.3
+# --------------------------
+echo "Cargando Intel oneAPI 2025.1..."
+source /opt/intel/oneapi/setvars.sh intel64 --force --compiler-version=2025.1
+
+# --------------------------
+# Definir compiladores Intel
+# --------------------------
+export CC=/opt/intel/oneapi/compiler/2025.1/bin/icx
+export CXX=/opt/intel/oneapi/compiler/2025.1/bin/icpx
+export FC=/opt/intel/oneapi/compiler/2025.1/bin/ifx
+
+echo "Compiladores configurados:"
+echo "  CC = $CC"
+echo "  CXX = $CXX"
+echo "  FC = $FC"
+
+# --------------------------
+# Limpiar build anterior
+# --------------------------
+if [ -d "$BUILD_DIR" ]; then
+    echo "Eliminando cache de CMake y archivos previos..."
+    rm -rf "$BUILD_DIR/CMakeCache.txt" "$BUILD_DIR/CMakeFiles"
+else
+    mkdir -p "$BUILD_DIR"
+fi
+
+# --------------------------
+# Ejecutar CMake con Ninja
+# --------------------------
+echo "Ejecutando CMake con Intel..."
+cmake -G Ninja \
+      -DCMAKE_BUILD_TYPE=Debug \
+      -DCMAKE_C_COMPILER=$CC \
+      -DCMAKE_CXX_COMPILER=$CXX \
+      -DCMAKE_Fortran_COMPILER=$FC \
+      -S "$SRC_DIR" \
+      -B "$BUILD_DIR"
+
+echo "¡Configuración completa! Ahora puedes compilar con:"
+echo "  ninja -C $BUILD_DIR"