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1. EngreitzLab/ipsc-ec-chrombpnet EngreitzLab/ipsc-ec-chrombpnet Public

   ChromBPNet pipeline for iPSC-to-EC differentiation: bias model training, contribution scores, motif discovery, and unified hit calling across 5 timepoints

   Python

2. DeplanckeLab/Chromatin_modules DeplanckeLab/Chromatin_modules Public

   Chromatin Modules across cell types

   Jupyter Notebook 4

3. DeplanckeLab/BIO373_GeneticsAndGenomics DeplanckeLab/BIO373_GeneticsAndGenomics Public

   Biofinformatics support for the Genetics and Genomics class (BIO373)

   HTML

4. DeplanckeLab/ChromatinHD DeplanckeLab/ChromatinHD Public

   High-definition modeling of chromatin + transcriptomics data

   Python 26

5. clomics-2.0 clomics-2.0 Public

   Forked from odelaneau/clomics

   Software package used for the Delaneau et al., 2019

   C++

6. EngreitzLab/gene_network_evaluation EngreitzLab/gene_network_evaluation Public

   Evaluation framework for computationally inferred gene networks from single-cell data.

   Jupyter Notebook 18 7