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55 changes: 55 additions & 0 deletions docs/taskforces.md
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Expand Up @@ -36,6 +36,21 @@ Develops community-driven open-source code libraries for perfusion imaging analy
Gathered and tested code for intravoxel incoherent motion (IVIM) analysis, with model fitting code in Python and Matlab.

[Task Force 2.4 details](tf/tf2-4.md)

!!! abstract "TF2.5 — Open-source ASL"
Demonstrate feasibility of acquiring ASL data across multiple vendors using 100% open-source tools

[Task Force 2.5 details](tf/tf2-5.md)

!!! abstract "TF2.6 — OSIPI python package"
To develop OSIPY, a community-led open source python library for quantitative perfusion MRI that replaces fragmented, in-house analysis tools with a standardized, reproducible, and accessible solution

[Task Force 2.6 details](tf/tf2-6.md)

!!! abstract "TF2.7 — IVIM preprocessing"
The taskforce aims to develop a code repository that implements all necessary preprocessing steps for IVIM data.

[Task Force 2.7 details](tf/tf2-7.md)

## Aim 3 — Data Inventory

Expand All @@ -50,6 +65,16 @@ Inventories with open-access (pre-)clinical or phantom data and digital referenc
Inventory of freely available clinical and preclinical perfusion MRI data. This task force is currently inactive due to insufficient members.

[Task Force 3.2 details](tf/tf3-2.md)

!!! abstract "TF3.3— IVIM big data collection"
To establish the extent to which site-, and vendor-specific differences impact quantitative IVIM measurement outcomes.To create a controlled-access repository of in vivo multi-site IVIM test-retest data

[Task Force 3.3 details](tf/tf3-3.md)

!!! abstract "TF3.4 — Data Register"
The taskforce aims to set-up a data registry of perfusion MRI to enable easier collaboration across the community

[Task Force 3.4 details](tf/tf3-4.md)

## Aim 4 — Lexicons

Expand All @@ -66,7 +91,22 @@ Develop terminology and reporting guidelines for image acquisition and perfusion

[Lexicons overview](lexicons.md) <br>
[📘 CAPLEX documentation](https://osipi.github.io/OSIPI_CAPLEX/)

!!! abstract "TF4.4 — BBB MRI lexicon"
To define standardized terminology, mathematical models, and best practices for BBB-MRI and to evaluate differences between BBB MRI approaches via simulations or experimental studies

[Task Force 4.4 details](tf/tf4-4.md)

!!! abstract "TF4.5 — IVIM lexicon"
To harmonize terminology for intravoxel incoherent motion (IVIM) though the development of a community-endorsed lexicon

[Task Force 4.5 details](tf/tf4-5.md)

!!! abstract "TF4.6 — Method section generator"
To develop publicly available online tool that would serve beginner-intermediate users of MRI perfusion techniques to correctly report the acquisition settings

[Task Force 4.6 details](tf/tf4-6.md)

## Aim 5 — Exchange and Education platform

Dissemination of resources through website and educational activities.
Expand All @@ -81,6 +121,16 @@ Dissemination of resources through website and educational activities.

[Task Force 5.2 details](tf/tf5-2.md)

!!! abstract "TF5.3 — AURA artifact repository"
To create an artifact inventory for perfusion imaging, including ASL, DCE and DSC

[Task Force 5.3 details](tf/tf5-3.md)

!!! abstract "TF5.4 — Clinical case reports"
To compile a collection of clinical ASL case reports featuring commonly encountered pathologies and characteristic image findings

[Task Force 5.4 details](tf/tf5-4.md)

## Aim 6 — Challenges

Develop challenges that compare the performance of perfusion image analysis software.
Expand All @@ -94,3 +144,8 @@ Develop challenges that compare the performance of perfusion image analysis soft
Develops challenges comparing DSC/DCE perfusion image analysis software.

[Task Force 6.2 details](tf/tf6-2.md)

!!! abstract "TF6.3 — IVIM algorithm comparison"
To study, quantify and explain the differences between IVIM fitting algorithms using the OSIPI IVIM code collection

[Task Force 6.3 details](tf/tf6-3.md)
5 changes: 4 additions & 1 deletion docs/tf/tf2-2.md
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Expand Up @@ -6,7 +6,10 @@ The code repository details are listed on the [Code Repositories page](../pyCode

## Leads

- [María Mora](mailto:magumoal@gmail.com)
- [María Mora](mailto:mmoraalvar@childrensnational.org)
- [Zhiliang Wei](mailto:zwei11@jhu.edu)

## Past Leads
- [Azeez Adebimpe](mailto:azeez.adebimpe@bayer.com)

## Ongoing projects
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19 changes: 19 additions & 0 deletions docs/tf/tf2-5.md
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# TF2.5 — Open-source ASL
Demonstrate feasibility of acquiring ASL data across multiple vendors using 100% open-source tools

## Leads

- [Ben Dickie](mailto:ben.dickie@manchester.ac.uk)
- [Martijn Nagtegaal](mailto:M.A.Nagtegaal@lumc.nl)

## Ongoing projects

Projects

## Publications

- Publications

## Resources

Resources
20 changes: 20 additions & 0 deletions docs/tf/tf2-6.md
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# TF2.6 — OSIPI python package

To develop OSIPY, a community-led open source python library for quantitative perfusion MRI that replaces fragmented, in-house analysis tools with a standardized, reproducible, and accessible solution.

## Leads

- [Luis Torres](mailto:luigibytes@gmail.com)
- [Petra van Houdt](mailto:p.v.houdt@nki.nl)

## Ongoing projects

Projects

## Publications

- Publications

## Resources

Resources
20 changes: 20 additions & 0 deletions docs/tf/tf2-7.md
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# TF2.7 — IVIM preprocessing

The taskforce aims to develop a code repository that implements all necessary preprocessing steps for IVIM data.

## Leads

- [Susi Rauh](mailto:s.s.rauh@lumc.nl)
- [Siria Pasini](mailto:Siria.Pasini@marionegri.it)

## Ongoing projects

Projects

## Publications

- Publications

## Resources

Resources
22 changes: 22 additions & 0 deletions docs/tf/tf3-3.md
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# TF3.3 — IVIM big data collection

To establish the extent to which site-, and vendor-specific differences impact quantitative IVIM measurement outcomes
To create a controlled-access repository of in vivo multi-site IVIM test-retest data


## Leads

- [Julia Stabinska](mailto:jstabin3@jhu.edu)
- [Helge Zoellner](mailto:hzoelln2@jhmi.edu)

## Ongoing projects

Projects

## Publications

- Publications

## Resources

Resources
20 changes: 20 additions & 0 deletions docs/tf/tf3-4.md
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# TF3.4 — Data Register

The taskforce aims to set-up a data registry of perfusion MRI to enable easier collaboration across the community

## Leads

- [Mathijs Dijsselhof](mailto:)
- [Co-lead?](mailto:)

## Ongoing projects

Projects

## Publications

- Publications

## Resources

Resources
20 changes: 20 additions & 0 deletions docs/tf/tf4-4.md
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# TF4.4 — BBB MRI lexicon

To define standardized terminology, mathematical models, and best practices for BBB-MRI and to evaluate differences between BBB MRI approaches via simulations or experimental studies

## Leads

- [Beatriz Padrela](mailto:b.estevespadrela@amsterdamumc.nl)
- [Ben Dickie](mailto:ben.dickie@manchester.ac.uk)

## Ongoing projects

Projects

## Publications

- Publications

## Resources

Resources
20 changes: 20 additions & 0 deletions docs/tf/tf4-5.md
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# TF4.5 — IVIM lexicon

To harmonize terminology for intravoxel incoherent motion (IVIM) though the development of a community-endorsed lexicon

## Leads

- [Oscar Jalnefjord](mailto:oscar.jalnefjord@gu.se)
- [Swati Rane](mailto:slevendovszky@kumc.edu)

## Ongoing projects

Projects

## Publications

- Publications

## Resources

Resources
20 changes: 20 additions & 0 deletions docs/tf/tf4-6.md
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# TF4.6 — Method section generator

To develop publicly available online tool that would serve beginner-intermediate users of MRI perfusion techniques to correctly report the acquisition settings

## Leads

- [David Thomas](mailto:d.thomas@ucl.ac.uk)
- [Jan Petr](mailto:j.petr@hzdr.de)

## Ongoing projects

Projects

## Publications

- Publications

## Resources

Resources
20 changes: 20 additions & 0 deletions docs/tf/tf5-3.md
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# TF5.3 — AURA artifact repository

To create an artifact inventory for perfusion imaging, including ASL, DCE and DSC

## Leads

- [Patricia Clemen](mailto:patricia.clement@ugent.be)
- [Sudipto Dolui](mailto:sudiptod@pennmedicine.upenn.edu)

## Ongoing projects

Projects

## Publications

- Publications

## Resources

Resources
20 changes: 20 additions & 0 deletions docs/tf/tf5-4.md
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# TF5.4 — Clinical case reports

To compile a collection of clinical ASL case reports featuring commonly encountered pathologies and characteristic image findings

## Leads

- [Thomas Lindner](mailto:t.lindner@uke.de)
- [Yuriko Suzuki](mailto:yuriko.l.suzuki@gmail.com)

## Ongoing projects

Projects

## Publications

- Publications

## Resources

Resources
5 changes: 5 additions & 0 deletions docs/tf/tf6-1.md
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Expand Up @@ -16,6 +16,11 @@ The ISMRM ASL MRI Challenge is the outcome of the first roadmap set by OSIPI TF6

## Leads

- [Lena Vaclavu](mailto:l.vaclavu@lumc.nl)
- [Aisling Fothergill](mailto:aisling.fothergill@manchester.ac.uk)

## Past Leads

- [Andre Paschoal](mailto:andremp@unicamp.br)
- [Icaro Oliveira](mailto:icaro.oliveira2@uhn.ca)

Expand Down
4 changes: 4 additions & 0 deletions docs/tf/tf6-2.md
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Expand Up @@ -16,6 +16,10 @@ The first challenge by this task force focused on benchmarking DCE software. As

## Leads

- [Olivia Jones](mailto:olivia.jones-4@manchester.ac.uk)

## Past Leads

- [Soudabeh Kargar](mailto:soudabeh.kargar@gmail.com)
- [Harrison Kim](mailto:hyunkikim@uabmc.edu)

Expand Down
20 changes: 20 additions & 0 deletions docs/tf/tf6-3.md
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# TF6.3 — IVIM algorithm comparison

To study, quantify and explain the differences between IVIM fitting algorithms using the OSIPI IVIM code collection

## Leads

- [Oliver Gurney Champion](mailto:o.j.gurney-champion@amsterdamumc.nl)
- [Ben Neijndorff](mailto:b.neijndorff@nki.nl)

## Ongoing projects

Projects

## Publications

- Publications

## Resources

Resources
11 changes: 11 additions & 0 deletions mkdocs.yml
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Expand Up @@ -157,18 +157,29 @@ nav:
- "(TF2.2) ASL Code": tf/tf2-2.md
- "(TF2.3) DSC/DCE Code": tf/tf2-3.md
- "(TF2.4) IVIM Code": tf/tf2-4.md
- "(TF2.5) Open-source ASL": tf/tf2-5.md
- "(TF2.6) OSIPI python package": tf/tf2-6.md
- "(TF2.7) IVIM preprocessing": tf/tf2-7.md
- "Aim 3 – Data":
- "(TF3.1) DROs & Phantoms": tf/tf3-1.md
- "(TF3.2) Clinical & Preclinical Data": tf/tf3-2.md
- "(TF3.3) IVIM big data collection": tf/tf3-3.md
- "(TF3.4) Data Register": tf/tf3-4.md
- "Aim 4 – Lexicons":
- "(TF4.1) ASL Lexicon": tf/tf4-1.md
- "(TF4.2) CAPLEX": tf/tf4-2.md
- "(TF4.4) BBB MRI lexicon": tf/tf4-4.md
- "(TF4.5) IVIM lexicon": tf/tf4-5.md
- "(TF4.6) Method section generator": tf/tf4-6.md
- "Aim 5 – Exchange & Education":
- "(TF5.1) Website & Technical Support": tf/tf5-1.md
- "(TF5.2) Education": tf/tf5-2.md
- "(TF5.3) AURA artifact repository": tf/tf5-3.md
- "(TF5.4) Clinical case reports": tf/tf5-4.md
- "Aim 6 – Challenges":
- "(TF6.1) ASL Challenge": tf/tf6-1.md
- "(TF6.2) DSC/DCE Challenge": tf/tf6-2.md
- "(TF6.3) IVIM algorithm comparison": tf/tf6-3.md
- "Roadmap 2026-2028": https://docs.google.com/document/d/1w2JlVK3hP5dgXMcrK8da5z94ivsK8Or__NU9qUR6WRk

- Resources:
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