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I188 clean up - #191

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nhsavage wants to merge 4 commits into
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i188_clean_up
Draft

I188 clean up#191
nhsavage wants to merge 4 commits into
mainfrom
i188_clean_up

restore missing parts of run.md but with clearer and update explanations

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Run pytest and coverage
succeeded Aug 6, 2026 in 1m 48s