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1. Mitochondrial_Benchmarking_study Mitochondrial_Benchmarking_study Public

   This repository contains the codes and additional data utilized in the benchmark study of short read based mitochondrial assemblers for human datasets

   R 1 1

2. MetaSutra MetaSutra Public

   This pipeline takes the raw metagenomic WGS reads as an input, assemble them, separate the contigs in MAGs, taxonomically classify the MAGs and quantify the ARGs in the MAGs. The pipeline is built …

   R 1

3. ANOMALY ANOMALY Public

   Snakemake workflow for calling NUMTs from Long read sequencing data. The pipeline takes either FASTQ or BAM file and outputs a text file containing NUMTs.

   Shell 5

4. NANOTAXI NANOTAXI Public

   An End-to-End GUI for real-time taxon identification via barcoded nanopore amplicon sequencing data. The pipeline is built using R Shiny library and majorly targets users with minimal coding backgr…

   R 3 1