fix(async): handle nested event loops in asyncio.run calls

src/skillspector/cli.py

@@ -232,6 +232,23 @@ def scan(
             "do not count toward the risk score).",
         ),
     ] = False,
+    baseline: Annotated[
+        Path | None,
+        typer.Option(
+            "--baseline",
+            "-b",
+            help="Baseline file (YAML/JSON) of suppressed findings. Matching findings "
+            "are dropped before scoring. Generate one with 'skillspector baseline'.",
+        ),
+    ] = None,
+    show_suppressed: Annotated[
+        bool,
+        typer.Option(
+            "--show-suppressed",
+            help="List findings suppressed by the baseline in the report (they still "
+            "do not count toward the risk score).",
+        ),
+    ] = False,
     verbose: Annotated[
         bool,
         typer.Option(

src/skillspector/llm_utils.py

@@ -30,6 +30,11 @@
 
 from __future__ import annotations
 
+import asyncio
+import concurrent.futures
+from collections.abc import Coroutine
+from typing import Any
+
 from langchain_core.language_models.chat_models import BaseChatModel
 from langchain_core.messages import BaseMessage
 
@@ -106,3 +111,29 @@ def chat_completion(prompt: str, *, model: str | None = None) -> str:
     if not isinstance(response, BaseMessage):
         raise TypeError(f"Expected BaseMessage from chat model, got {type(response).__name__}")
     return str(response.text)
+
+
+def run_async(coroutine: Coroutine) -> Any:
+    """
+    Run an async coroutine in a synchronous context, even if there's already a running event loop.
+
+    This function safely handles nested event loop scenarios (e.g. Jupyter Notebooks, FastAPI,
+    LangGraph Studio) by offloading the coroutine execution to a separate thread with its own
+    event loop when a running loop is detected.
+
+    Args:
+        coroutine: The async coroutine to run
+
+    Returns:
+        The result of the coroutine execution
+
+    Raises:
+        Any exception raised by the coroutine is re-raised as-is
+    """
+    try:
+        asyncio.get_running_loop()
+    except RuntimeError:
+        return asyncio.run(coroutine)
+
+    with concurrent.futures.ThreadPoolExecutor(max_workers=1) as executor:
+        return executor.submit(asyncio.run, coroutine).result()

src/skillspector/nodes/analyzers/semantic_developer_intent.py

@@ -22,10 +22,9 @@
 
 from __future__ import annotations
 
-import asyncio
-
 from skillspector.constants import _SKILLSPECTOR_DEFAULT_MODEL, MODEL_CONFIG
 from skillspector.llm_analyzer_base import LLMAnalyzerBase
+from skillspector.llm_utils import run_async
 from skillspector.logging_config import get_logger
 from skillspector.state import AnalyzerNodeResponse, SkillspectorState
 
@@ -176,7 +175,7 @@ def node(state: SkillspectorState) -> AnalyzerNodeResponse:
         prompt = ANALYZER_PROMPT.format(manifest_section=_format_manifest(manifest))
         analyzer = LLMAnalyzerBase(base_prompt=prompt, model=model)
         batches = analyzer.get_batches(sorted(file_cache), file_cache)
-        results = asyncio.run(analyzer.arun_batches(batches))
+        results = run_async(analyzer.arun_batches(batches))
         findings = analyzer.collect_findings(results)
         logger.info("%s: %d findings", ANALYZER_ID, len(findings))
         return {"findings": findings}

src/skillspector/nodes/analyzers/semantic_quality_policy.py

@@ -22,10 +22,9 @@
 
 from __future__ import annotations
 
-import asyncio
-
 from skillspector.constants import _SKILLSPECTOR_DEFAULT_MODEL
 from skillspector.llm_analyzer_base import LLMAnalyzerBase
+from skillspector.llm_utils import run_async
 from skillspector.logging_config import get_logger
 from skillspector.state import AnalyzerNodeResponse, SkillspectorState
 
@@ -145,7 +144,7 @@ def node(state: SkillspectorState) -> AnalyzerNodeResponse:
     try:
         analyzer = LLMAnalyzerBase(base_prompt=ANALYZER_PROMPT, model=model)
         batches = analyzer.get_batches(files, file_cache)
-        results = asyncio.run(analyzer.arun_batches(batches))
+        results = run_async(analyzer.arun_batches(batches))
         findings = analyzer.collect_findings(results)
         logger.info("%s: %d findings", ANALYZER_ID, len(findings))
         return {"findings": findings}

src/skillspector/nodes/meta_analyzer.py

@@ -22,7 +22,6 @@
 
 from __future__ import annotations
 
-import asyncio
 import json
 from typing import Literal
 
@@ -33,6 +32,7 @@
     LLMAnalyzerBase,
     estimate_tokens,
 )
+from skillspector.llm_utils import run_async
 from skillspector.logging_config import get_logger
 from skillspector.models import Finding
 from skillspector.nodes.analyzers.pattern_defaults import (
@@ -532,7 +532,7 @@ def meta_analyzer(state: SkillspectorState) -> MetaAnalyzerResponse:
             model,
         )
 
-        batch_results = asyncio.run(analyzer.arun_batches(batches, metadata_text=metadata_text))
+        batch_results = run_async(analyzer.arun_batches(batches, metadata_text=metadata_text))
 
         if len(batch_results) < len(batches):
             # Some batches never returned. A finding the LLM never saw has no

tests/unit/test_llm_utils.py

@@ -22,6 +22,8 @@
 
 from __future__ import annotations
 
+import asyncio
+
 import pytest
 from langchain_anthropic import ChatAnthropic
 from langchain_core.messages import AIMessage
@@ -33,6 +35,7 @@
     fetch_model_token_limits,
     get_chat_model,
     is_llm_available,
+    run_async,
 )
 from skillspector.providers import NO_LLM_API_KEY_MESSAGE, resolve_provider_credentials
 from skillspector.providers.nv_build import NvBuildProvider
@@ -183,6 +186,48 @@ def test_returns_false_with_message_when_no_credentials(self) -> None:
         assert msg == NO_LLM_API_KEY_MESSAGE
 
 
+class TestRunAsync:
+    """Tests for run_async helper function that handles nested event loops."""
+
+    async def _test_async_function(self, value: int, delay: float = 0) -> int:
+        """Simple async function for testing."""
+        if delay > 0:
+            await asyncio.sleep(delay)
+        return value * 2
+
+    async def _test_async_function_raises(self) -> None:
+        """Async function that raises an exception for testing."""
+        raise ValueError("Test exception")
+
+    def test_run_async_without_running_loop(self) -> None:
+        """Test run_async works correctly when there is no running event loop."""
+        result = run_async(self._test_async_function(42))
+        assert result == 84
+
+    def test_run_async_with_running_loop(self) -> None:
+        """Test run_async works correctly even when there is already a running event loop.
+
+        This regression test covers the scenario where SkillSpector is invoked from
+        environments like Jupyter Notebooks, FastAPI, or LangGraph Studio that already
+        have an active event loop.
+        """
+        async def _test_in_running_loop() -> int:
+            # Call run_async from within an already running event loop
+            return run_async(self._test_async_function(100))
+
+        # Use asyncio.run to create a running loop context
+        result = asyncio.run(_test_in_running_loop())
+        assert result == 200
+
+    def test_run_async_propagates_exceptions(self) -> None:
+        """Test exceptions from async functions are properly propagated."""
+        with pytest.raises(ValueError, match="Test exception"):
+            run_async(self._test_async_function_raises())
+
+    def test_run_async_with_delay(self) -> None:
+        """Test run_async correctly handles async functions with await calls."""
+        result = run_async(self._test_async_function(5, delay=0.01))
+        assert result == 10
 class TestGetChatModel:
     def test_openai_fallback_uses_openai_default_model(
         self, monkeypatch: pytest.MonkeyPatch