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Pull requests: NVIDIA-BioNeMo/bionemo-framework

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Pull requests list

Jwilber/nemotron sae recipe
#1614 opened Jun 6, 2026 by jwilber Collaborator Loading…
@jwilber
2
feat(sae): Triton sparse decoder, tensor-parallel training, streaming
#1613 opened Jun 6, 2026 by jwilber Collaborator Loading…
@jwilber
3
Bump pyarrow from 23.0.0 to 23.0.1 in /bionemo-recipes/interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1612 opened Jun 5, 2026 by dependabot Bot Loading…
2
Bump pyarrow from 21.0.0 to 23.0.1 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1611 opened Jun 5, 2026 by dependabot Bot Loading…
2
Bump the all-dependencies group across 1 directory with 202 updates dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1609 opened Jun 5, 2026 by dependabot Bot Loading…
2
Bump the all-dependencies group across 1 directory with 202 updates dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1608 opened Jun 5, 2026 by dependabot Bot Loading…
2
chore(deps): combined dependabot dependency updates
#1606 opened Jun 5, 2026 by svc-bionemo Collaborator Loading…
1
evo2 SAE feature-explorer dashboard
#1604 opened Jun 5, 2026 by polinabinder1 Collaborator • Draft
2
evo2 SAE inference engine + CLI (encode / batch / serve)
#1603 opened Jun 5, 2026 by polinabinder1 Collaborator • Draft
2
Bump starlette from 0.50.0 to 1.0.1 in /bionemo-recipes/interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1602 opened Jun 4, 2026 by dependabot Bot Loading…
2
Bump starlette from 0.48.0 to 1.0.1 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1601 opened Jun 4, 2026 by dependabot Bot Loading…
2
Bump qs from 6.14.1 to 6.15.2 in /bionemo-recipes/interpretability/sparse_autoencoders/recipes/codonfm/codon_dashboard dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1599 opened Jun 3, 2026 by dependabot Bot Loading…
2
[Evo2] Switch from static to faster/more modern dynamic inference engine ciflow:notebooks Run Jupyter notebooks execution tests for docs and bionemo2
#1597 opened Jun 3, 2026 by jstjohn Collaborator Loading…
1 of 9 tasks
8
Bump qs from 6.14.1 to 6.15.2 in /bionemo-recipes/interpretability/sparse_autoencoders/recipes/esm2/protein_dashboard dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1593 opened Jun 2, 2026 by dependabot Bot Loading…
2
Bump idna from 3.11 to 3.15 in /bionemo-recipes/interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1592 opened Jun 2, 2026 by dependabot Bot Loading…
2
Bump urllib3 from 2.6.3 to 2.7.0 in /bionemo-recipes/interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1591 opened Jun 2, 2026 by dependabot Bot Loading…
2
Bump gitpython from 3.1.46 to 3.1.50 in /bionemo-recipes/interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1590 opened Jun 2, 2026 by dependabot Bot Loading…
2
Bump gitpython from 3.1.45 to 3.1.50 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1589 opened Jun 2, 2026 by dependabot Bot Loading…
2
Bump mistune from 3.1.3 to 3.2.1 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1588 opened Jun 2, 2026 by dependabot Bot Loading…
2
Bump urllib3 from 1.26.20 to 2.7.0 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1587 opened Jun 2, 2026 by dependabot Bot Loading…
2
Bump idna from 3.10 to 3.15 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1586 opened Jun 2, 2026 by dependabot Bot Loading…
2
evo2 SAE recipe: streaming extract.py + env-overridable sweep runner
#1583 opened May 29, 2026 by polinabinder1 Collaborator • Draft
5 tasks
2
[DRAFT] Evo 2 SAE feature explorer — visualization mockup
#1582 opened May 26, 2026 by polinabinder1 Collaborator • Draft
5 tasks
2
Add Evo2 1B SAE recipe + fix Savanna weights_only loading
#1579 opened May 21, 2026 by polinabinder1 Collaborator Loading…
3 tasks
2
interpretability/sae: add bionemo-sae-recipe Claude skill
#1578 opened May 21, 2026 by polinabinder1 Collaborator Loading…
9 tasks
2
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