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2 changes: 1 addition & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,7 @@ jupyter/__pycache__/
.ipynb_checkpoints/
__pycache__/
dist/
suite2p.egg-info/
*.egg-info/
build/
suite2p/classifiers/classifier_user.npy
suite2p/ops/ops_user.npy
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6 changes: 4 additions & 2 deletions rastermap/sort.py
Original file line number Diff line number Diff line change
Expand Up @@ -197,15 +197,17 @@ def traveling_salesman(cc, n_iter=400, locality=0.0, circular=False,

cc, inds, seg_len, start_pos, end_pos, flipped = tsp_fast(
cc, n_iter, n_nodes, n_skip, BBt.astype(np.float32), verbose)
iter_completed = np.nonzero(seg_len == -1)[0][0]
nz = np.nonzero(seg_len == -1)[0]
iter_completed = nz[0] if nz.size > 0 else n_iter
seg_len = seg_len[:iter_completed]
start_pos = start_pos[:iter_completed]
end_pos = end_pos[:iter_completed]
flipped = flipped[:iter_completed]
if n_skip > 1:
cc, inds2, seg_len2, start_pos2, end_pos2, flipped2 = tsp_fast(
cc, n_iter, n_nodes, 1, BBt.astype(np.float32), verbose)
iter_completed = np.nonzero(seg_len2 == -1)[0][0]
nz = np.nonzero(seg_len2 == -1)[0]
iter_completed = nz[0] if nz.size > 0 else n_iter
seg_len = np.append(seg_len, seg_len2[:iter_completed])
start_pos = np.append(start_pos, start_pos2[:iter_completed])
end_pos = np.append(end_pos, end_pos2[:iter_completed])
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