===========================================================================
Matlab software implementation for:
    A BAYESIAN NONPARAMETRIC APPROACH TO SINGLE MOLECULE FORSTER RESONANCE
    ENERGY TRANSFER
    J. PHYS. CHEM. B (2019)
===========================================================================
 
Copyright (C) 2019, Ioannis Sgouralis, and Steve Presse

 
This software package includes several Matlab scripts and auxiliary
functions, which implement the computational algorithms for the method
bl-ICON described in the following publication:
 
    A Bayesian nonparametric approach to single molecule Forster Resonance
    Energy Transfer
    Ioannis Sgouralis, Shreya Madaan, Franky Djutanta, Rachael Kha, 
    Rizal Hariadi, and Steve Presse
    J. Chem. Phys. (2019)
 
Additional information can be found in the following publications:
    
    Single Molecule Force Spectroscopy at High Data Acquisition: A Bayesian
    Nonparametric Analysis
    Ioannis Sgouralis, Miles Whitmore, Lisa Lapidus, Matthew J. Comstock,
    and Steve Presse
    J. Chem. Phys. (2018)
    doi: 10.1063/1.5008842

    An Introduction to Infinite HMMs for Single-Molecule Data Analysis
    Ioannis Sgouralis, and Steve Presse
    Biophys J. 112(10):2021-2029 (2017)
    doi: 10.1016/j.bpj.2017.04.027.

    ICON: An Adaptation of Infinite HMMs for Time Traces with Drift
    Ioannis Sgouralis, and Steve Presse
    Biophys J. 112(10):2117-2126 (2017)
    doi: 10.1016/j.bpj.2017.04.009.

Please cite the papers above in any publications using this software.

 
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Setup and Usage
===========================================================================
  
1) To use this software in GUI form run:
    bl_ICON_sampler
in Matlab's command window.
 
2) To use this software in source form run:
    bl_ICON_demo
in Matlab's command window.
 
3) For further details or to report bugs contact:
    isgoural@asu.edu or spresse@asu.edu

4) This software (source code and GUI) has been developed in Matlab R2017b.

 
===========================================================================
Copyright and License
===========================================================================
 
Copyright (C) 2019, Ioannis Sgouralis, and Steve Presse
 
 
Permission is granted for anyone to copy, use, or modify these programs 
and accompanying documents for purposes of research or education, provided
this copyright notice is retained, and note is made of any changes that
have been made.
 
These programs and documents are distributed without any warranty, express 
or implied.  As the programs were written for research purposes only, they 
have not been tested to the degree that would be advisable in any important
application.  All use of these programs is entirely at the user's own risk.