Update Seurat.R - #94
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Seurat.R modifications: - Read10X function path assignment didn't need to paste0() with current wd since it has already been set - Added code to modify our gene ids from ENSEMBL to gene symbol or the other way round as fas as we modify it accordingly. - Added percent of ribosomal genes for the violin plot. - Added scatter plots to visualise QC metric. - Added distribution of total number of molecules detected within a cell. - Added distribution of genes detected per cell. - Added volcano plot labelling the top10 differentially expressed genes. - Adding cluster names to the TSNEplots. - Implementing loop for the feature plot to integrate 10 plots per page efficiently. - Performance and visualization of marker comparison "TR1 vs TH0" and "TFH vs TH0"
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Seurat.R modifications: