Added picking functionalities to the binding

CMakeLists.txt

@@ -29,12 +29,14 @@ include(fetch_sqlite3)
 include(fetch_fftw3)
 include(fetch_libtiff)
 include(fetch_libjpeg)
+include(fetch_libsvm)
 
 fetch_hdf5()
 fetch_sqlite3()
 fetch_fftw3()
 fetch_libtiff()
 fetch_libjpeg()
+fetch_libsvm()
 
 if(SKBUILD_PLATLIB_DIR)
 	set(PYTHON_INSTALL_DIR "${SKBUILD_PLATLIB_DIR}")
@@ -77,13 +79,16 @@ file(
 list(
     APPEND
     SOURCES
+        ${XMIPP3_LIBRARY_DIR}/classification/svm_classifier.cpp
         ${XMIPP3_LIBRARY_DIR}/reconstruction/ctf_enhance_psd.cpp
         ${XMIPP3_LIBRARY_DIR}/reconstruction/ctf_estimate_from_micrograph.cpp
         ${XMIPP3_LIBRARY_DIR}/reconstruction/ctf_estimate_from_psd_base.cpp
         ${XMIPP3_LIBRARY_DIR}/reconstruction/ctf_estimate_from_psd.cpp
         ${XMIPP3_LIBRARY_DIR}/reconstruction/ctf_estimate_from_psd_fast.cpp
         ${XMIPP3_LIBRARY_DIR}/reconstruction/ctf_estimate_psd_with_arma.cpp
         ${XMIPP3_LIBRARY_DIR}/reconstruction/fringe_processing.cpp
+        ${XMIPP3_LIBRARY_DIR}/reconstruction/image_rotational_pca.cpp
+        ${XMIPP3_LIBRARY_DIR}/reconstruction/micrograph_automatic_picking2.cpp
         ${XMIPP3_LIBRARY_DIR}/reconstruction/psd_estimator.cpp
         ${XMIPP3_LIBRARY_DIR}/data/basic_pca.cpp
         ${XMIPP3_LIBRARY_DIR}/data/basis.cpp
@@ -98,6 +103,7 @@ list(
         ${XMIPP3_LIBRARY_DIR}/data/grids.cpp
         ${XMIPP3_LIBRARY_DIR}/data/integration.cpp
         ${XMIPP3_LIBRARY_DIR}/data/mask.cpp
+        ${XMIPP3_LIBRARY_DIR}/data/micrograph.cpp
         ${XMIPP3_LIBRARY_DIR}/data/morphology.cpp
         ${XMIPP3_LIBRARY_DIR}/data/normalize.cpp
         ${XMIPP3_LIBRARY_DIR}/data/numerical_tools.cpp
@@ -118,6 +124,7 @@ target_link_libraries(
         Python::Module
         Python::NumPy
         sqlite3
+        libsvm
         HDF5::CXX
         HDF5::HDF5
         FFTW3::Double

cmake/modules/fetch_libsvm.cmake

@@ -0,0 +1,36 @@
+#***************************************************************************
+# Authors:     Oier Lauzirika Zarrabeitia (oierlauzi@bizkaia.eu)
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
+# 02111-1307  USA
+#
+#  All comments concerning this program package may be sent to the
+#  e-mail address 'xmipp@cnb.csic.es'
+# ***************************************************************************
+
+include(ExternalProject)
+
+function(fetch_libsvm)
+	cmake_policy(SET CMP0135 NEW) # To avoid warnings
+	FetchContent_Declare(
+  		libsvm
+  		URL https://github.com/cossorzano/libsvm/archive/refs/heads/master.tar.gz
+	)
+	FetchContent_MakeAvailable(libsvm)
+
+	set(CMAKE_POSITION_INDEPENDENT_CODE ON)
+	add_library(libsvm STATIC ${libsvm_SOURCE_DIR}/svm.cpp)
+	target_include_directories(libsvm PUBLIC ${libsvm_SOURCE_DIR})
+endfunction()