Code base for analyzing data recorded from mice.

Installation

Prerequisites

Conda (Anaconda or Miniconda) must be installed.

1. Create the conda environment

From the root of the repository:

conda env create -f environment.yml
conda activate els-project

2. Install the local package

With the environment active, install the src package in editable mode:

pip install -e .

The -e flag installs in editable (development) mode, so any changes to the source files in src/ are reflected immediately without reinstalling.

3. Verify

from src import helper  # or any other module in src/

Updating the environment

If environment.yml changes (e.g., after pulling new commits):

conda env update -f environment.yml --prune