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Geongyu/README.md

👋 Hi, I'm Geongyu Lee

AI Researcher | Computational Pathology · Pathology Foundation Models · Multi-Omics

AI researcher with 5+ years building deep learning systems for computational pathology. Currently at OMIXAI, extending histopathology AI into proteomics and multi-omics integration — toward drug response prediction and precision oncology. Previously at Deep Bio, where I led WSI pipeline development and KFDA-track model validation.

My work sits at the intersection of gigapixel WSI analysis, representation learning, and multi-omics modeling, with a focus on clinically deployable and interpretable AI.


🔥 Recent Highlights

  • 🏢 OMIXAI (Feb 2025 – Present) — Multi-omics foundation model R&D; proteomics-based Drug Response Prediction (Pearson ≥ 0.65, LDO CV); Pan-Sarcoma proteogenomics collaboration (Korea–US–Japan); Virtual Cell Challenge
  • 📄 Prostate International (2025)AI-driven Digital Pathology in Urological Cancers | Co-First Author
  • 🎤 AAAI 2026 Workshop (W3PHIAI, Oral)G2L: From Giga-Scale to Cancer-Specific Pathology Foundation Models via Knowledge Distillation | 3rd Author | arXiv:2510.11176
  • 🥈 KPI Challenge 2024 (MICCAI 2024) — 2nd Place, Glomerular Segmentation, Whole-Slide Track
  • 📄 Scientific Reports (2025)Breast Cancer Recurrence Risk from H&E WSIs | 1st Author | link

📚 Selected Publications

Paper Venue Role
🖼️ G2L: Pathology Foundation Models via Knowledge Distillation AAAI W3PHIAI 2026 (Oral) 3rd Author
🖼️ Multi-Section WSI Analysis for Prostate Cancer BCR arXiv 2026 Co-Author
🖼️ KPI 2024: Glomerular Segmentation Patch-to-Slide arXiv 2025 Co-Author
🧬 Breast Cancer Recurrence Risk from H&E WSIs Scientific Reports 2025 1st Author
🧬 AI-driven Digital Pathology in Urological Cancers Prostate International 2025 Co-1st Author
🖼️ MurSS: Multi-Resolution Segmentation for Breast Cancer Bioengineering 2024 Co-Author
🖼️ Supervised Contrastive Embedding for Medical Image Segmentation IEEE Access 2022 Co-Author

🛠️ Stack

Deep Learning · PyTorch · HuggingFace Transformers · PEFT/LoRA · Accelerate · DDP/FSDP

Pathology · OpenSlide · QuPath · CLAM · Foundation Models (UNI, CONCH, Virchow) · WSI tiling pipelines

Bio / Omics · scanpy · AnnData · proteomic representation learning · ADMET modeling

MLOps · Docker · Slurm · W&B · MLflow · FastAPI · Git


🎓 Education

M.S. Data Science — Seoul National University of Science and Technology (SeoulTech), 2019–2021 B.S. Information Security — Daejeon University, 2012–2019


📫 Contact

📧 rjsrb365@gmail.com · LinkedIn · Google Scholar

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