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Patching PerturbOT installation#1

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raphaelrubrice wants to merge 7 commits into
Genentech:mainfrom
raphaelrubrice:pr
Open

Patching PerturbOT installation#1
raphaelrubrice wants to merge 7 commits into
Genentech:mainfrom
raphaelrubrice:pr

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@raphaelrubrice

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Several have been experiencing issues when trying to use PerturbOT due to installation issues and a delicate environment.

The patch involves a few steps which aim to address several issues:

  • Incomplete installation of the perturbot module with the proposed commands in the previous README (the installed module is almost empty)
  • Delicate environment which requires very specific versions of jax and anndata to avoid errors.

This PR provides a detailed installation procedure in order to have a working PerturbOT package.

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