Adding recipes and logger module

[matteobecchi]

Requested Reviewers: @andrewtarzia

Recipes:

• How to compute descriptors directly from Trj
• How to compute descriptors using dimensionality reduction
• How to perform information gain analysis for clustering a dataset

dynsight.logs: it creates an instance of the Logger class, that is then used throughout the user's script allowing at the end to save a log.txt file.

[matteobecchi]

Added deeptime dependency, it's necessary for TICA, it was not tested before but now it's in the docs and thus necessary.

[andrewtarzia]

This is great. Focussing on the logger in this review. Love it though

[andrewtarzia]

Some minor things, @matteobecchi, otherwise great work!

[matteobecchi]

@andrewtarzia installation is failing on remote with python 3.13 and I can't understand why.

Everything works on my local machine, and I only made "esthetic" changes in the docs.

It says "Failed to build dscribe"