Skip to content

Added WDL and scripts to to LD based region segmentation. WIP#52

Draft
Fedja wants to merge 1 commit into
masterfrom
alt_region_selection_mk
Draft

Added WDL and scripts to to LD based region segmentation. WIP#52
Fedja wants to merge 1 commit into
masterfrom
alt_region_selection_mk

Conversation

@Fedja

@Fedja Fedja commented Mar 7, 2022

Copy link
Copy Markdown
Contributor

Experimental scripts to do LD based segmentation on FinnGen endpoints without storing full precomputed LD.

R9 demophenos segmented with r=0.4 gs://r9_data/finemap/demopheno/ld_regions/r2_0.4/demopheno_r0.4_regions
or r=0.2 gs://r9_data/finemap/demopheno/ld_regions/r2_0.2/demopheno_r0.2_regions

Mosty smaller regions but strong signals can be very large. Let's see how these compare to the regular runs.

@Fedja Fedja requested review from Lipastomies and mkanai March 7, 2022 23:10
@Fedja Fedja marked this pull request as draft November 3, 2022 15:45
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant