To run this code, you will need to install R and the following R packages:

install.packages(c(
 "tidyverse",
    "targets",
    "rethinking",
    "rstan",
    "patchwork",
    "loo",
    "bayesplot",
    "HDInterval",
    "future",
    "furrr",
    "RColorBrewer")

You will also require the rethinking package, which you can install with the following code (see here for more details):

# from https://github.com/rmcelreath/rethinking
install.packages(c("coda", "mvtnorm", "devtools", "loo", "dagitty"))
devtools::install_github("rmcelreath/rethinking")

Executing code

1. Set your working directory in R to this code repository
2. Load the targets package with library(targets)
3. To run all analyses, run tar_make()
4. To load individual targets into your environment, run tar_load(targetName)

To visualize how the various code and functions work together in the pipeline, run targets::tar_visnetwork().