This repository contains all the scripts used to generate figures in my doctoral thesis, entitled "How human and murine T cells meet their fate: cross-species comparison of conventional and innate T cells". I completed my PhD at the CSHL School of Biological Sciences in May 2024, under the supervision of Dr. Hannah V. Meyer (check out the Meyer lab).
For now my thesis is not publicly available, however you can check out our paper. If you're interested in exploring the data we generated, you can use our Shiny interface. It contains both :
- human T cell scRNAseq+TCRseq data (from thymus & blood);
- an integrated murine dataset of all publicly available innate thymocytes scRNAseq data (i.e. MAIT, iNKT and γδT cells in thymus).
If you're interested in downloading our data for your own purposes, you can find it on GEO.