- Strider: A biophysical framework for nucleic acid thermodynamics, kinetics, and DNA/RNA circuit assembly. Computes ensemble free energies and maps toehold-mediated strand displacement (TMSD) landscapes natively without external dependencies.
- Mantis: An open-source symbolic analyzer for Chemical Reaction Network Theory (CRNT). Bridges network topology with mass-action kinetics to generate symbolic ODEs and certify qualitative, parameter-independent structural stability guarantees.
- LAVA: Latent Aging Velocity Atlas: Mapped continuous-time biological aging by compressing multi-domain clinical deficits into an 8D latent manifold via a β-VAE, integrated with Neural ODEs for longitudinal forecasting.
- ATOMICA-Diffusion: A unified pipeline for de novo antibiotic design. Developed an SE(3)-equivariant cross-attention mechanism to condition the DiffSBDD generative model on deep protein embeddings.
- Arq Molecular Engineering: An autonomous AI multi-agent system (CrewAI/LangGraph) using graph-based state machines to optimize molecules based on structural guardrails and RDKit calculations.
| Programming | AI / ML / Data | Systems & Web | Bio-Design & Lab |
|---|---|---|---|
 Python C++ R TypeScript |
 PyTorch TensorFlow NumPy / Pandas LangGraph
|
 React FastAPI Docker Embedded (ESP32/Pi)
|
 CAD (Fusion 360/Rhino) Genomic Data Analysis🔬 Organic Synthesis & PCR 📊 Flow Cytometry & Cell Culture |
