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Documentation and release notes for count observation model

enhancementNew feature or requestNew feature or request

ready-for-agentFully specified, ready for an AFK agentFully specified, ready for an AFK agent

Status: Open.

#50 In EPPIcenter/moire;

· m-murphy opened on Jun 18, 2026

Count-aware simulator and simulation smoke test

enhancementNew feature or requestNew feature or request

ready-for-agentFully specified, ready for an AFK agentFully specified, ready for an AFK agent

Status: Open.

#49 In EPPIcenter/moire;

· m-murphy opened on Jun 18, 2026

Count Poisson observation model — full MCMC inference path

enhancementNew feature or requestNew feature or request

ready-for-agentFully specified, ready for an AFK agentFully specified, ready for an AFK agent

Status: Open.

#48 In EPPIcenter/moire;

· m-murphy opened on Jun 18, 2026

Count data loading and genotyping initialization

enhancementNew feature or requestNew feature or request

ready-for-agentFully specified, ready for an AFK agentFully specified, ready for an AFK agent

Status: Open.

#47 In EPPIcenter/moire;

· m-murphy opened on Jun 18, 2026

Observation model interface with binary parity

enhancementNew feature or requestNew feature or request

ready-for-agentFully specified, ready for an AFK agentFully specified, ready for an AFK agent

Status: Open.

#46 In EPPIcenter/moire;

· m-murphy opened on Jun 18, 2026

PRD: Count-based observation model (alternative to binary error process)

enhancementNew feature or requestNew feature or request

ready-for-agentFully specified, ready for an AFK agentFully specified, ready for an AFK agent

Status: Open.

#45 In EPPIcenter/moire;

· m-murphy opened on Jun 18, 2026

Memory issue with very long allele names

Status: Open.

#44 In EPPIcenter/moire;

· m-murphy opened on Mar 26, 2025

Select samples for allele frequency estimation

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#43 In EPPIcenter/moire;

· essut opened on Mar 6, 2025

take a closer look at adaptation algorithms

Status: Open.

#41 In EPPIcenter/moire;

· m-murphy opened on Nov 8, 2024

Detect potential data issues

enhancementNew feature or requestNew feature or request

Status: Open.

#30 In EPPIcenter/moire;

· m-murphy opened on Sep 6, 2024

add diagnostics for parallel tempering

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In EPPIcenter/moire;

· m-murphy opened on Sep 6, 2024

allow for ZINB distributed COI

enhancementNew feature or requestNew feature or request

Status: Open.

#22 In EPPIcenter/moire;

· m-murphy opened on Jun 30, 2024