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create_ionic_molecule should have args that pass to smi_to_mol and mol_to_nx

Status: Open.

#433 In ELIFE-ASU/assemblytheorytools;

· LouieSlocombe opened on Jun 11, 2026

recursive MA tests need reworking

Status: Open.

#432 In ELIFE-ASU/assemblytheorytools;

· LouieSlocombe opened on Mar 17, 2026

Add performance note

Status: Open.

#427 In ELIFE-ASU/assemblytheorytools;

· LouieSlocombe opened on Mar 14, 2026

Add docs pages

Status: Open.

#426 In ELIFE-ASU/assemblytheorytools;

· LouieSlocombe opened on Mar 11, 2026

Update doc strings

Status: Open.

#418 In ELIFE-ASU/assemblytheorytools;

· LouieSlocombe opened on Feb 27, 2026

add a version of the plotting code where the size is determined by the number of objects

Status: Open.

#417 In ELIFE-ASU/assemblytheorytools;

· LouieSlocombe opened on Feb 26, 2026

add a version of plot_pathway where the white arrows are used and the arrow head is half way on the edge

Status: Open.

#415 In ELIFE-ASU/assemblytheorytools;

· LouieSlocombe opened on Feb 23, 2026

Add a function which manually merges assembly paths

Status: Open.

#405 In ELIFE-ASU/assemblytheorytools;

· LouieSlocombe opened on Feb 18, 2026

precompiling should try and use the make versions of the assemblycpp code

Status: Open.

#395 In ELIFE-ASU/assemblytheorytools;

· LouieSlocombe opened on Feb 13, 2026

Trigger attempt at installation during first run

Status: Open.

#339 In ELIFE-ASU/assemblytheorytools;

· LouieSlocombe opened on Dec 29, 2025

Consider removing precompiled binaries

Status: Open.

#321 In ELIFE-ASU/assemblytheorytools;

· LouieSlocombe opened on Nov 19, 2025