refactor(cosmo_val): god-class → tested, primitive-backed package#207

Merged

cailmdaley merged 42 commits into

refactor/cosmo-val-package

Jun 30, 2026

Commits on Jun 20, 2026

refactor(src): dissolve basic.py into calibration + statistics

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felt: reserved-sasha — document Sasha's hands-off zones

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test(statistics): pin the extracted helpers; drop dead code in calibration

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refactor(src): delete dead info.py, fix cat.py version import

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refactor(src): make package __all__ honest

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refactor(cosmo_val): hoist b_modes imports to module top level

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refactor(run_joint_cat): drop shadowed confusion_matrix def

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refactor: remove dead cluster/convergence-map helpers

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refactor(src): rename util -> format; drop dead transform_nan import

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refactor(src): move SquareRootScale to plots, re-export from rho_tau

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fix(papers/harmonic): repoint SquareRootScale off dead utils_cosmo_val

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refactor(src): rename run_joint_cat -> catalog_builders

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Extract masks.py from catalog_builders.py

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Rename cat.py -> catalog.py: catalogue data layer

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style(ruff): repo-wide ruff format pass (mechanical, no semantic change)
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chore(ruff): wire ruff (pre-commit + CI) + region-aware lint policy
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fix(ruff): region-aware lint fixes (behavior-preserving, adversarially verified)
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chore(ruff): scope CI lint to library; broaden E402 ignores for per-paper analysis scripts
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refactor(cosmo_val): convert module to package (core.py + __init__ re-export)

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refactor(cosmo_val): extract PseudoClMixin (pseudo_cl)

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refactor(cosmo_val): extract CatalogCharacterizationMixin (catalog_characterization)
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refactor(cosmo_val): extract PSFSystematicsMixin (psf_systematics)
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refactor(cosmo_val): extract RealSpaceMixin (real_space)

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refactor(cosmo_val): extract PureEBMixin (pure_eb)

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refactor(cosmo_val): extract CosebisMixin (cosebis)

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refactor(cosmo_val): fix sibling-module imports for package depth

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fix(examples): call hsp_map_logical_or from plots, not the cosmo_val module
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refactor(cosmo_val): tighten + de-dupe the mixin modules (behavior-preserving)

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refactor(cosmo_val): drop get_cov_from_onecov, use statistics.cov_from_one_covariance directly

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refactor(cosmo_val): _output_path helper for output-path construction

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refactor(cosmo_val): _binning helper for treecorr-config overrides

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refactor(cosmo_val): collapse print_* color helpers onto _cprint

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refactor(stats): chi2_and_pte uses solve+sf; route B-mode PTE through it (re-bless pins ~ULP)

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refactor(cosmo_val): _calibrated_g / _read_shear_cols for shared shear calibration

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refactor(cosmo_val): keep _calibrated_g strictly behavior-preserving per caller
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fix(cosmo_val): aperture-mass uses the DES R11/R22 branch like 2pcf
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refactor(cosmo_val): extract survey-stat primitives to survey.py, thin the mixin

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test(pseudo_cl): pin the pseudo-Cl estimator outputs (golden values)

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refactor(pseudo_cl): extract estimator primitives to top-level pseudo_cl.py, thin the mixin

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refactor(glass_mock): use shared pseudo_cl primitives, drop drifted copies

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Commits on Jun 21, 2026

fix(pseudo_cl): make noise-debiasing reproducible (seed the rng)
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Commits on Jun 30, 2026

Merge develop into refactor/cosmo-val-package (resolve post-#206 conflicts)

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