Merge upstream, no conflicts

.github/workflows/bump_on_dependency.yml

@@ -0,0 +1,21 @@
+name: Bump dev version on dependency PR
+on:
+  pull_request:
+    types: [closed]
+
+jobs:
+  Bump:
+    name: Bump prerelease version
+    if: >
+      github.event.pull_request.merged == true &&
+      github.event.pull_request.base.ref == 'main' &&
+      contains(
+        github.event.pull_request.labels.*.name,
+        'dependencies'
+      )
+    uses: AstarVienna/DevOps/.github/workflows/bump.yml@main
+    secrets: inherit
+    with:
+      rule: prerelease
+      branch: main
+

.readthedocs.yaml

@@ -5,7 +5,7 @@
 version: 2
 
 build:
-  os: "ubuntu-22.04"
+  os: "ubuntu-24.04"
   tools:
     python: "3.11"
   jobs:

CHANGELOG.md

@@ -1,3 +1,72 @@
+# Version 0.11.4
+**2026-05-20**
+
+Quick patch to make TipTop PSFs work with ScopeSim effects.
+
+## What's Changed
+### New Features or Improvements
+* Squeeze extra dimensions out of PSF kernel by @teutoburg in https://github.com/AstarVienna/ScopeSim/pull/908
+### Dependency Changes
+* Bump nbconvert from 7.17.0 to 7.17.1 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/906
+* Bump lxml from 6.0.2 to 6.1.0 by @teutoburg in https://github.com/AstarVienna/ScopeSim/pull/907
+* Bump pytest and pytest-cov by @teutoburg in https://github.com/AstarVienna/ScopeSim/pull/909
+* Bump jupyterlab and notebook by @teutoburg in https://github.com/AstarVienna/ScopeSim/pull/914
+* Bump jupyter-server from 2.11.2 to 2.18.0 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/921
+* Bump mistune from 3.0.2 to 3.2.1 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/923
+* Bump urllib3 from 2.6.3 to 2.7.0 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/926
+### Other Changes
+* Update hashes for PPS_CFO2 psfs by @oczoske in https://github.com/AstarVienna/ScopeSim/pull/925
+
+**Full Changelog**: https://github.com/AstarVienna/ScopeSim/compare/v0.11.3...v0.11.4
+
+
+# Version 0.11.3
+**2026-04-16**
+
+Some new effects and a lot of bugfixing.
+
+## What's Changed
+### API Changes
+* Plot system transmission components by @oczoske in https://github.com/AstarVienna/ScopeSim/pull/894
+### Bugs fixed
+* Read fp_mask_{}.dat explicitely as float by @oczoske in https://github.com/AstarVienna/ScopeSim/pull/869
+* Extend Blackbody wavelength range to cover all filters by @oczoske in https://github.com/AstarVienna/ScopeSim/pull/872
+* Pixel area must be positive by @oczoske in https://github.com/AstarVienna/ScopeSim/pull/878
+* Use NumPy 2.3.5 for Python 3.13+ by @teutoburg in https://github.com/AstarVienna/ScopeSim/pull/882
+* Fixes off-by-a-half in FOVs by @oczoske in https://github.com/AstarVienna/ScopeSim/pull/880
+* Fix PupilTransmission emission after update by @oczoske in https://github.com/AstarVienna/ScopeSim/pull/900
+### Changes to or addition of Effects
+* Add `PixelResponseNonUniformity` effect for fixed per-pixel gain variation (PRNU) by @ShannonS00 in https://github.com/AstarVienna/ScopeSim/pull/886
+* Add offset to spectral transformations to enable shifted slits by @oczoske in https://github.com/AstarVienna/ScopeSim/pull/875
+* Minor PSF refactor and more logs by @teutoburg in https://github.com/AstarVienna/ScopeSim/pull/901
+* Fibre transmission for WCU lasers by @oczoske in https://github.com/AstarVienna/ScopeSim/pull/904
+* Add a large scale illumination effect   by @ShannonS00 in https://github.com/AstarVienna/ScopeSim/pull/898
+### Dependency Changes
+* Bump synphot, allow packaging 26 by @teutoburg in https://github.com/AstarVienna/ScopeSim/pull/870
+* Bump numpydoc from 1.9.0 to 1.10.0 in the dev-dependencies group by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/873
+* Bump ipykernel from 6.31.0 to 7.1.0 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/874
+* Bump nbconvert from 7.16.4 to 7.17.0 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/876
+* Bump pillow from 12.1.0 to 12.1.1 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/877
+* Bump astar-utils from 0.5.0 to 0.5.1 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/881
+* Bump jupytext from 1.18.1 to 1.19.0 in the dev-dependencies group by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/884
+* Bump tqdm from 4.67.1 to 4.67.3 in the main-dependencies group by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/883
+* Bump tornado from 6.5 to 6.5.5 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/888
+* Bump requests from 2.32.4 to 2.33.0 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/891
+* Bump pygments from 2.17.2 to 2.20.0 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/892
+* Bump astar-utils from 0.5.1 to 0.5.2 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/890
+* Bump the dev-dependencies group with 3 updates by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/896
+* Bump pooch from 1.8.2 to 1.9.0 by @dependabot[bot] in https://github.com/AstarVienna/ScopeSim/pull/897
+* Bump pillow from 12.1.1 to 12.2.0 by @teutoburg in https://github.com/AstarVienna/ScopeSim/pull/903
+### Documentation Improvements
+* Document system transmission plot in getting_started by @oczoske in https://github.com/AstarVienna/ScopeSim/pull/895
+* Docstring and typing fixes in preparation for release by @teutoburg in https://github.com/AstarVienna/ScopeSim/pull/902
+
+## New Contributors
+* @ShannonS00 made their first contribution in https://github.com/AstarVienna/ScopeSim/pull/886
+
+**Full Changelog**: https://github.com/AstarVienna/ScopeSim/compare/v0.11.2...v0.11.3
+
+
 # Version 0.11.2
 **2026-01-20**
 

docs/source/getting_started.ipynb

@@ -316,6 +316,26 @@
     "simulation.settings[\"!ATMO\"]"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "id": "15efee46-576f-4aee-9dd9-3ab2fe68ba14",
+   "metadata": {},
+   "source": [
+    "### Inspecting the system transmission\n",
+    "\n",
+    "The total system transmission and the contribution from the individual elements in the optical train can be visualised as follows:"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "80c0c1cd-cc6c-4015-9c7c-ed0bc5479c98",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "simulation.optical_train.optics_manager.system_transmission(plot=True);"
+   ]
+  },
   {
    "cell_type": "markdown",
    "id": "labeled-railway",
@@ -354,7 +374,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.12.7"
+   "version": "3.12.9"
   }
  },
  "nbformat": 4,

docs/source/index.rst

@@ -14,15 +14,40 @@ ScopeSim_ is on pip::
 
     pip install scopesim_templates
 
-.. warning:: July 2022: The downloadable content server was retired and the data migrated to a new server.
+.. _ScopeSim:    https://scopesim.readthedocs.io/en/latest/
+.. _`ScopeSim Templates`: https://scopesim-templates.readthedocs.io/en/latest/
 
-   ScopeSim v0.5.1 and above have been redirected to a new server URL.
+.. |metis_logo| image:: https://irdb.readthedocs.io/en/latest/_images/metis_scopesim_logo.png
+   :height: 100px
+   :target: https://irdb.readthedocs.io/en/latest/METIS/docs/README.html
+
+.. |micado_logo| image:: https://irdb.readthedocs.io/en/latest/_images/micado_scopesim_logo.png
+   :height: 100px
+   :target: https://irdb.readthedocs.io/en/latest/MICADO/docs/README.html
+
+.. |mosaic_logo| image:: https://irdb.readthedocs.io/en/latest/_images/mosaic_scopesim_logo.png
+   :height: 100px
+   :target: https://irdb.readthedocs.io/en/latest/MOSAIC/docs/README.html
+
+.. |youtube_icon| image:: https://upload.wikimedia.org/wikipedia/commons/thumb/0/09/YouTube_full-color_icon_%282017%29.svg/960px-YouTube_full-color_icon_%282017%29.svg.png
+   :height: 30px
+   :target: https://www.youtube.com/@ScopeSimTutorials
+
+
+.. note:: Looking for ELT specific user documentation?
+
+   See the MICADO, METIS, and MOSAIC user guides on the `IRDB documentation page <https://irdb.readthedocs.io/en/latest/>`_
+
+   |micado_logo|  |metis_logo|  |mosaic_logo|
+
+.. note:: ScopeSim Tutorials on Youtube
+
+   A series of introductory tutorials are now available on youtube
+
+   |youtube_icon| @ScopeSimTutorials
 
-   For older verions, please either upgrade to the latest version (``pip install --upgrade scopesim``), or follow these `instructions to update the server URL <https://astarvienna.github.io/server_upgrade_instructions.html>`_ in the config file.
 
 
-.. _ScopeSim:    https://scopesim.readthedocs.io/en/latest/
-.. _`ScopeSim Templates`: https://scopesim-templates.readthedocs.io/en/latest/
 
 .. toctree::
     :maxdepth: 2
@@ -33,6 +58,12 @@ ScopeSim_ is on pip::
     5_liners/index
     faqs/index
 
+.. warning:: July 2022: The downloadable content server was retired and the data migrated to a new server.
+
+   ScopeSim v0.5.1 and above have been redirected to a new server URL.
+
+   For older verions, please either upgrade to the latest version (``pip install --upgrade scopesim``), or follow these `instructions to update the server URL <https://astarvienna.github.io/server_upgrade_instructions.html>`_ in the config file.
+
 
 The ScopeSim python ecosystem
 -----------------------------
@@ -58,7 +89,7 @@ There are several packages in the ScopeSim_ ecosystem to be aware of:
 
 .. _ScopeSim:    https://scopesim.readthedocs.io/en/latest/
 .. _`ScopeSim Templates`: https://scopesim-templates.readthedocs.io/en/latest/
-.. _IRDB:        https://github.com/astronomyk/irdb
+.. _IRDB:        https://irdb.readthedocs.io/en/latest/
 .. _AnisoCADO:   https://anisocado.readthedocs.io/en/latest/
 .. _skycalc_ipy: https://skycalc-ipy.readthedocs.io/en/latest/
 .. _SpeXtra:     https://spextra.readthedocs.io/en/latest/