This repository contains material for the analysis of Microtus whole genomes.
Files for data preprocessing:
-
00_compute_popgen_stats.R -
00_compute_RNDsp.R -
00_utils.R -
00_VCF_preprocessing.sh
Files for data analysis and visualisation:
-
01_make_pop_history_plots.R -
02_make_RNDsp_plots.R -
03_make_GO_Enrichment_plots.R -
04_make_outlier_overlap_plot.R -
05_make_zooms_div_plot.R
Supplementary information:
99_supp_correlations-dxy-pi.R