Jenner compatibility tests for 5 scripts#1
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Adds a jenner-check/ directory with five runnable bundles derived from gformula_bmtdata.sas, plus a pure-SAS runner (run_jenner.sh/.bat/.sas): t001_baseline_covariates - DATALINES read + restricted-cubic-spline covariates t002_person_period_expansion - DO-loop person-day expansion with time-varying covariates t003_logistic_coefficient_model - PROC LOGISTIC coefficient estimation with ODS OUTPUT t004_surveyselect_resample - PROC SURVEYSELECT Monte Carlo resample (METHOD=URS) t005_phreg_cox_survival - PROC PHREG Cox model (TIES=EFRON, risk limits) Each bundle has a frozen expected.json plus a human-readable expected/ snapshot (log, listing, artifact URLs).
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Jenneranalytics.com provides an API that runs SAS code, with support for more than 200 SAS procedures. You can also use it with Anthropic Claude Code AI in a collaborative workspace. It's available for Mac on the Apple App Store, and by license for Windows and Linux. The SAS in this repository runs on it unmodified — this PR adds a few compatibility bundles, in a new
jenner-check/directory that touches nothing else, so you can confirm that for yourself.Each bundle carries its own
script.sas, sample data, and a frozenexpected/snapshot of a passing run (log, listing, dataset previews). Run one withcd jenner-check && ./run_jenner.sh t005_phreg_cox_survival, or all of them with./run_jenner.sh --all; the same scripts also run from the hosted workspace at jenneranalytics.com.The structure of this tutorial made it a pleasure to work with. The person-day expansion in particular reads cleanly — the
DO day = 1 TO tloop with its lagged indicators and running day-counters lays out the time-varying covariate bookkeeping in a way that is easy to follow, and the restricted cubic splines with explicit knots are a nice touch. It's clear why the worked example has held up as a reference.No response is expected — merge it, close it, or leave it as you like. If you'd prefer not to receive contributions like this in the future, reply with
no-more-prsor open an issue titledjenner-check: opt outand we'll skip the repository.